Alternatives and similar repositories for RoseTTAFold2

Users that are interested in RoseTTAFold2 are comparing it to the libraries listed below

• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆164Updated last year
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆198Updated 2 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆148Updated 5 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆229Updated 2 months ago
• ikalvet / heme_binder_diffusion
  ☆139Updated 3 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆163Updated 3 weeks ago
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆223Updated 2 months ago
• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆331Updated 2 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆240Updated last week
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆163Updated 9 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆162Updated last year
• yehlincho / BoltzDesign1
  ☆216Updated 2 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆322Updated last year
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆170Updated last year
• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆120Updated 2 years ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆140Updated 2 months ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆219Updated last year
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆160Updated last month
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆270Updated 2 years ago
• RosettaCommons / RFdiffusion2
  Inference code for RFdiffusion2
  ☆308Updated last week
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆148Updated last week
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆200Updated 6 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆146Updated 2 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆106Updated 5 months ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆165Updated 2 years ago
• RosettaCommons / RFantibody
  ☆298Updated 3 weeks ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆206Updated 5 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 7 months ago