mjendrusch / salad
protein structure generation with sparse all-atom denoising models
☆30Updated 2 months ago
Alternatives and similar repositories for salad:
Users that are interested in salad are comparing it to the libraries listed below
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 10 months ago
- Extension of ThermoMPNN for double mutant predictions☆32Updated last month
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆32Updated 5 months ago
- Modelling protein conformational landscape with Alphafold☆47Updated this week
- ☆31Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated 11 months ago
- ☆35Updated last year
- Public Release of ProGen3 family of Models☆32Updated this week
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆40Updated 5 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆29Updated 2 weeks ago
- Generative diverse protein backbones by protein language model☆31Updated 4 months ago
- A benchmark for 3D biomolecular structure prediction models☆57Updated 4 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆45Updated 3 months ago
- Benchmarking code accompanying the release of `bioemu`☆21Updated this week
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆46Updated 4 months ago
- ☆34Updated 7 months ago
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆11Updated 10 months ago
- Baseline model for PPB-Affinity benchmark data☆23Updated 4 months ago
- An open-source platform for developing protein models beyond AlphaFold.☆11Updated this week
- ☆26Updated 2 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- ☆27Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- ☆59Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆39Updated 4 months ago
- Protein stability prediction using rewired protein generative models☆20Updated 3 weeks ago
- ☆65Updated last month
- ☆49Updated last month
- Code for the paper "Learning to engineer protein flexibility".☆16Updated 3 weeks ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆46Updated last week