mjendrusch / salad
protein structure generation with sparse all-atom denoising models
☆28Updated last month
Alternatives and similar repositories for salad:
Users that are interested in salad are comparing it to the libraries listed below
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 9 months ago
- Generative diverse protein backbones by protein language model☆31Updated 3 months ago
- Extension of ThermoMPNN for double mutant predictions☆30Updated 2 weeks ago
- ☆31Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆32Updated 4 months ago
- Modelling protein conformational landscape with Alphafold☆45Updated 2 weeks ago
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆11Updated 9 months ago
- ☆27Updated 3 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆45Updated last week
- IDPFold test version☆19Updated 6 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated 2 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆43Updated 3 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆40Updated 4 months ago
- ☆49Updated last week
- ☆36Updated last year
- A benchmark for 3D biomolecular structure prediction models☆56Updated 3 months ago
- ☆33Updated 6 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆38Updated 4 months ago
- code for SeqDance, a biophysics-informed protein language model☆23Updated 5 months ago
- Benchmarking code accompanying the release of `bioemu`☆18Updated last month
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated 10 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆43Updated last week
- ☆62Updated last week
- Sidechain conditioning and modeling for full-atom protein sequence design☆83Updated last month
- ☆26Updated last month
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆11Updated 10 months ago
- ☆34Updated 11 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆21Updated last year