Alternatives and similar repositories for ThermoMPNN

Users that are interested in ThermoMPNN are comparing it to the libraries listed below

• ikalvet / heme_binder_diffusion
  ☆140Updated 2 months ago
• yehlincho / BoltzDesign1
  ☆209Updated last month
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆161Updated 6 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆145Updated last year
• zhanghaicang / carbonmatrix_public
  ☆116Updated 3 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆126Updated 3 years ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆227Updated 2 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆162Updated 2 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆159Updated 2 weeks ago
• RosettaCommons / modelforge
  Central repository for biomolecular foundation models with shared trainers and pipeline components
  ☆169Updated 2 weeks ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆147Updated 5 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆159Updated 8 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆68Updated this week
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆135Updated 2 weeks ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆99Updated 6 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆237Updated last month
• levinthal / Pallatom
  ☆117Updated 4 months ago
• RosettaCommons / RFdiffusion2
  Inference code for RFdiffusion2
  ☆292Updated 3 weeks ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆101Updated 2 weeks ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆146Updated 3 weeks ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆85Updated last month
• varun-shanker / structural-evolution
  ☆114Updated last year
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆79Updated 2 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆161Updated last year
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆119Updated 2 years ago
• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆326Updated last month
• jertubiana / ScanNet
  ☆133Updated 3 months ago
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆119Updated last week
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆110Updated last week