De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
☆186Apr 21, 2024Updated last year
Alternatives and similar repositories for genie
Users that are interested in genie are comparing it to the libraries listed below
Sorting:
- Implementation for SE(3) diffusion model with application to protein backbone generation☆414Jul 3, 2023Updated 2 years ago
- ☆65Sep 14, 2023Updated 2 years ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- ☆117Dec 7, 2022Updated 3 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆315Jul 19, 2024Updated last year
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆275Dec 10, 2024Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- A generative model for programmable protein design☆801Apr 11, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Making Protein Design accessible to all via Google Colab!☆888Updated this week
- Compressing protein structures effectively with torsion angles☆188Feb 10, 2026Updated 3 weeks ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆564Dec 12, 2023Updated 2 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆354Jun 29, 2023Updated 2 years ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Aug 11, 2023Updated 2 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- A collection of *fold* tools☆302Aug 8, 2025Updated 6 months ago
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- ☆95Oct 14, 2025Updated 4 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Mar 7, 2024Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- ☆216Mar 2, 2024Updated 2 years ago
- ☆212Sep 24, 2024Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆516Oct 21, 2025Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 2 years ago
- Code for the ProteinMPNN paper☆1,636Aug 14, 2024Updated last year
- Fast protein structure searching or your money back☆118Jan 14, 2026Updated last month
- Protein-ligand structure prediction☆238Jul 31, 2025Updated 7 months ago
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Jul 29, 2024Updated last year
- ☆547Feb 6, 2025Updated last year
- Public RFDiffusionAA repo☆464Jul 9, 2024Updated last year
- OmegaFold Release Code☆612Dec 12, 2022Updated 3 years ago
- Protein hallucination and inpainting with RoseTTAFold☆279Mar 30, 2023Updated 2 years ago
- List of papers about Proteins Design using Deep Learning☆1,889Updated this week
- Aligning protein generative models with experimental fitness☆119Oct 16, 2025Updated 4 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆166Jul 30, 2025Updated 7 months ago