aqlaboratory / genieLinks
De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
☆181Updated last year
Alternatives and similar repositories for genie
Users that are interested in genie are comparing it to the libraries listed below
Sorting:
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆177Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆214Updated 6 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆214Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆132Updated 4 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆104Updated 10 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆199Updated last month
- Generative Language Modeling for Antibody Design☆161Updated 10 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆166Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆95Updated 3 months ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆123Updated 2 years ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆131Updated 9 months ago
- ☆106Updated 2 years ago
- ☆109Updated 2 months ago
- Official repository of EnzymeFlow☆93Updated 8 months ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆118Updated 6 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆75Updated 2 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆159Updated 2 years ago
- ☆197Updated 4 months ago
- Protein-ligand structure prediction☆226Updated 3 weeks ago
- Aligning protein generative models with experimental fitness☆103Updated 2 weeks ago
- ☆111Updated 2 years ago
- ☆199Updated 11 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆117Updated 5 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆90Updated last year
- Protein Design with Guided Discrete Diffusion☆133Updated last year
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆78Updated 3 months ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆342Updated 2 years ago