Alternatives and similar repositories for af_backprop

Users that are interested in af_backprop are comparing it to the libraries listed below

• jproney / AF2Rank
  ☆114Updated 3 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆72Updated 10 months ago
• uw-ipd / tmol
  TMol
  ☆50Updated this week
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 11 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆98Updated 2 years ago
• brennanaba / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆34Updated 3 years ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆61Updated 4 months ago
• ProteinDesignLab / caliby
  Potts model-based protein sequence design
  ☆78Updated last week
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated last month
• bene837 / af2seq
  ☆47Updated last year
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆72Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆36Updated 2 years ago
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆37Updated 3 years ago
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆52Updated 6 months ago
• jproney / ProteinEBM
  ☆82Updated last month
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆44Updated 9 months ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆97Updated 7 months ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆32Updated 3 years ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆55Updated last month
• bwicky / oligomer_hallucination
  ☆37Updated 2 years ago
• RosettaCommons / FvHallucinator
  ☆28Updated 3 years ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆39Updated 5 months ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆81Updated 2 years ago
• coreyhowe999 / RSO
  ☆21Updated last year
• Kuhlman-Lab / evopro
  ☆94Updated 3 months ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆66Updated 4 months ago
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆40Updated last year