☆37Oct 16, 2024Updated last year
Alternatives and similar repositories for af_backprop
Users that are interested in af_backprop are comparing it to the libraries listed below
Sorting:
- ☆11Apr 25, 2021Updated 4 years ago
- ☆134Sep 14, 2022Updated 3 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆21Jan 17, 2024Updated 2 years ago
- Benchmarking scripts for Gaia☆14Apr 10, 2025Updated 10 months ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- ☆117Dec 7, 2022Updated 3 years ago
- ☆65Sep 14, 2023Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated last year
- ☆36Dec 7, 2025Updated 2 months ago
- ☆18Mar 13, 2024Updated last year
- Colorblind-friendly, perceptually uniform palettes for pymol☆20Jan 25, 2021Updated 5 years ago
- ☆134Jun 3, 2025Updated 8 months ago
- Making Protein Design accessible to all via Google Colab!☆886Dec 8, 2025Updated 2 months ago
- ☆39Jun 25, 2025Updated 8 months ago
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- LMetalSite: alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learn…☆19Oct 23, 2025Updated 4 months ago
- functional genomic data integration☆10Sep 22, 2019Updated 6 years ago
- ☆18Dec 22, 2017Updated 8 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆59Oct 17, 2022Updated 3 years ago
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆63Oct 28, 2025Updated 4 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 7 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- ☆43Jan 10, 2024Updated 2 years ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆24Jan 25, 2024Updated 2 years ago
- In silico directed evolution of peptide binders with AlphaFold☆262Jan 5, 2026Updated last month
- ☆12Jun 19, 2018Updated 7 years ago
- GitHub for AI4PD 2023 Workshop in Chile☆12Oct 12, 2023Updated 2 years ago
- Contact map alignment☆42Feb 3, 2021Updated 5 years ago
- ☆11Aug 5, 2020Updated 5 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 9 months ago
- Neural network model for prediction of amino-acid sequence from a protein backbone structure☆25Mar 5, 2025Updated 11 months ago