Alternatives and similar repositories for protein_seq_des

Users that are interested in protein_seq_des are comparing it to the libraries listed below

• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆21Updated 6 years ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• Shen-Lab / gcWGAN
  Guided Conditional Wasserstein GAN for De Novo Protein Design
  ☆35Updated 4 years ago
• bwicky / oligomer_hallucination
  ☆37Updated 2 years ago
• LPDI-EPFL / RosettaSurf
  ☆15Updated 4 years ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆36Updated 2 years ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆36Updated 2 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆72Updated 10 months ago
• prescient-design / igloo
  Tokenizing Loops of Antibodies
  ☆23Updated last month
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 4 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆21Updated 6 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆12Updated last year
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆12Updated 4 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• csi-greifflab / developability_profiling
  ☆27Updated 4 months ago
• brennanaba / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆33Updated 3 years ago
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆40Updated 4 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 5 years ago
• stemylonas / DeepSurf
  A surface-based deep learning approach for the prediction of ligand binding sites on proteins
  ☆43Updated 2 years ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆41Updated last year
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆28Updated 2 years ago
• zzhangzzhang / pLMs-interpretability
  ☆33Updated last year
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆50Updated 3 years ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• barricklab / mutant-protein-stability
  Modeling the effects of mutations in proteins using PyRosetta
  ☆27Updated 7 years ago
• dina-lab3D / NanoNet
  ☆51Updated 2 years ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆81Updated 2 years ago
• Graylab / deepH3-distances-orientations
  ☆35Updated 4 years ago