nanand2 / protein_seq_des
Code for our paper "Protein sequence design with a learned potential"
☆34Updated 3 years ago
Alternatives and similar repositories for protein_seq_des
Users that are interested in protein_seq_des are comparing it to the libraries listed below
Sorting:
- ☆35Updated last year
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆29Updated 2 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆34Updated 3 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆42Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 4 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated 11 months ago
- Physical energy function for protein sequence design☆30Updated 2 years ago
- Source code and examples for AlphaFold Unmasked☆63Updated last month
- ☆27Updated 2 years ago
- ☆66Updated last month
- dMaSIF implementation for google colab☆32Updated 2 years ago
- ☆19Updated 2 years ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- Python package to atom map, correct and suggest enzymatic reactions☆38Updated last year
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆24Updated last year
- ☆38Updated 4 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆31Updated last month
- Fast and accurate molecular docking with an AI pose scoring function☆37Updated last year
- ☆29Updated 4 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆47Updated 5 months ago
- ☆45Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- A benchmark for 3D biomolecular structure prediction models☆57Updated this week
- ☆21Updated 4 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 4 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- ☆20Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆32Updated 2 years ago