PDB-REDO / alphafillLinks
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
☆109Updated last month
Alternatives and similar repositories for alphafill
Users that are interested in alphafill are comparing it to the libraries listed below
Sorting:
- ☆54Updated 3 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- GTalign, high-performance protein structure alignment, superposition and search☆51Updated 3 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆95Updated last week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 7 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆116Updated last year
- ☆47Updated 10 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆65Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- ☆37Updated 4 months ago
- Direct coupling analysis software for protein and RNA sequences☆53Updated 4 months ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆70Updated last year
- scripts and facilities for in-silico mutagenesis with FoldX☆61Updated 4 months ago
- Set of useful HADDOCK utility scripts☆55Updated 2 months ago
- Learning the language of protein-protein interactions☆103Updated last month
- AlphaFold-initiated replica exchange protein docking☆84Updated 5 months ago
- ☆74Updated last year
- ☆88Updated last year
- Toolkit for alphafold3 input and output files☆90Updated last month
- Graph Network for protein-protein interface including language model features☆33Updated last year
- Protein folding in Pymol☆124Updated 3 weeks ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆60Updated 2 weeks ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆99Updated 3 months ago
- ☆31Updated last year
- ☆50Updated 4 months ago
- Tools for annotation, processing and ML for antibody sequences☆33Updated this week
- ☆84Updated 3 weeks ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆42Updated 5 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆70Updated 3 weeks ago
- pyFoldX: python bindings for FoldX.☆51Updated 4 years ago