PDB-REDO / alphafillLinks
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
☆110Updated 2 weeks ago
Alternatives and similar repositories for alphafill
Users that are interested in alphafill are comparing it to the libraries listed below
Sorting:
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆56Updated 5 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- GTalign, high-performance protein structure alignment, superposition and search☆54Updated 5 months ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆71Updated 2 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆113Updated last week
- ☆87Updated 2 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆123Updated last year
- Set of useful HADDOCK utility scripts☆57Updated 4 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆66Updated last month
- ☆39Updated 7 months ago
- Toolkit for alphafold3 input and output files☆95Updated last month
- Direct coupling analysis software for protein and RNA sequences☆58Updated 6 months ago
- Contact map alignment☆42Updated 5 years ago
- Protein folding in Pymol☆138Updated 2 months ago
- A domain parser for Alphafold models☆46Updated 2 years ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆72Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆45Updated 3 years ago
- Official repository for the ProteinDJ protein design pipeline☆87Updated 3 weeks ago
- ☆91Updated last year
- Efficient manipulation of protein structures in Python☆63Updated 4 months ago
- ☆77Updated last year
- Learning the language of protein-protein interactions☆131Updated 3 weeks ago
- PyDock Tutorial☆35Updated 7 years ago
- AlphaFold-initiated replica exchange protein docking☆87Updated 8 months ago
- Protein Structure Analysis☆63Updated 4 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆62Updated 5 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆113Updated 5 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated 2 years ago
- Python package to manage protein structures and their annotations☆45Updated last year