zaixizhang / FAIR
NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
☆48Updated last year
Alternatives and similar repositories for FAIR
Users that are interested in FAIR are comparing it to the libraries listed below
Sorting:
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆55Updated 3 weeks ago
- ☆12Updated last year
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆71Updated 7 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 10 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆59Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆57Updated 2 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 3 months ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆38Updated 9 months ago
- This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).☆30Updated 7 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆70Updated this week
- A standardized protein design benchmark for motif-scaffolding problems☆57Updated last week
- Official repository of ReactZyme☆30Updated 7 months ago
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆35Updated last year
- A Novel Approach for Protein Sequence Design Based on Secondary Strucure☆20Updated 2 months ago
- Deep learning datasets for RNA 3D and 2.5D structures.☆34Updated last week
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆76Updated 4 months ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Updated last year
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated 11 months ago
- GeoSSL: Molecular Geometry Pretraining with SE(3)-Invariant Denoising Distance Matching, ICLR'23 (https://openreview.net/forum?id=CjTHVo1…☆45Updated last year
- Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"☆66Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆93Updated 2 years ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆42Updated 5 months ago
- ☆16Updated 6 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆34Updated last month
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated last year