zaixizhang / FAIR
NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
☆44Updated last year
Related projects ⓘ
Alternatives and complementary repositories for FAIR
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆51Updated 6 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆32Updated last week
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆22Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆25Updated 8 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆53Updated 5 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆48Updated last month
- ☆32Updated last month
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆30Updated 11 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆39Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆51Updated last year
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆34Updated 4 months ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆14Updated 11 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆93Updated 7 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆24Updated 3 weeks ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆65Updated 8 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆87Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆47Updated last month
- Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms☆26Updated 11 months ago
- Topological transformer for protein-ligand complex interaction prediction.☆29Updated 4 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆75Updated 11 months ago
- Code for 'On Pre-trained Language Models For Antibody'☆30Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆68Updated last year
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆39Updated this week
- Public version for Distance-AF☆17Updated 7 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 5 months ago
- ☆75Updated last month
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆10Updated 5 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2024☆43Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆60Updated 9 months ago