johnnytam100 / AlphaCutter
This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
☆15Updated last year
Alternatives and similar repositories for AlphaCutter:
Users that are interested in AlphaCutter are comparing it to the libraries listed below
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆26Updated last year
- ☆41Updated 4 months ago
- ☆24Updated 2 weeks ago
- A Python framework for the rapid modeling of glycans☆12Updated this week
- Explicit crosslinks in AlphaFold 3☆15Updated last month
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆14Updated 3 weeks ago
- ML toolset for creating TED: The Encyclopedia of Domains☆11Updated 5 months ago
- Extension of ThermoMPNN for double mutant predictions☆20Updated 2 weeks ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆26Updated 9 months ago
- ☆16Updated 2 months ago
- PyDock Tutorial☆30Updated 6 years ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆45Updated last month
- ML-optimized library design with improved fitness and diversity for protein engineering☆27Updated 5 months ago
- ☆14Updated 3 months ago
- ☆24Updated 7 months ago
- Making Protein folding accessible to all!☆19Updated last year
- Some scripts that I keep using over and over.☆18Updated last month
- Some Rosetta Scripts that allow for various simple tasks☆14Updated 5 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- ☆24Updated last month
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆16Updated last year
- Code for deep learning guided design of dynamic proteins☆17Updated 6 months ago
- ☆29Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆31Updated 2 months ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆14Updated this week
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆30Updated 2 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Modelling protein conformational landscape with Alphafold☆37Updated last week
- code for SeqDance, a biophysics-informed protein language model☆21Updated 3 months ago
- ☆38Updated last year