This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
☆15Jul 25, 2023Updated 2 years ago
Alternatives and similar repositories for AlphaCutter
Users that are interested in AlphaCutter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 6 months ago
- ☆17Aug 20, 2024Updated last year
- ☆50Sep 25, 2024Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence …☆15Apr 20, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction☆34Mar 18, 2025Updated last year
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆24Apr 10, 2026Updated 2 months ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Dec 14, 2023Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated last year
- Predict disorder and disorder binding from AlphaFold structures☆19Nov 25, 2024Updated last year
- A novel approach to the classification of antimicrobial peptides (AMPs) using pre-trained language models to create contextual vectorized…☆18Sep 10, 2024Updated last year
- ☆312Jun 5, 2026Updated last week
- ☆47Sep 16, 2024Updated last year
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆18May 7, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated last month
- Bi-Encoder approach for large-scale protein-peptide binding search☆13Jun 14, 2024Updated last year
- ☆69Apr 8, 2025Updated last year
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆139Nov 11, 2025Updated 7 months ago
- Toolkit for alphafold3 input and output files☆104Jun 5, 2026Updated last week
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆30Jul 20, 2025Updated 10 months ago
- Local Interaction Score (LIS) for structure prediction analysis☆72May 30, 2026Updated last week
- ☆12Jun 16, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Building more accurate protein structures from backbone torsion angles☆15Mar 21, 2025Updated last year
- ☆65Sep 14, 2023Updated 2 years ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Collection of useful bioinformatic functions and tools for various computational biology pipelines☆47May 26, 2026Updated 2 weeks ago
- Code for deep learning guided design of dynamic proteins☆33Jul 16, 2024Updated last year
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 3 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- Protein-Protein Docking using Genetic Algorithm☆20Jun 3, 2026Updated last week
- ☆15Mar 28, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tokenizing Loops of Antibodies☆35Nov 23, 2025Updated 6 months ago
- ☆16Jan 10, 2023Updated 3 years ago
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆59Jan 12, 2026Updated 4 months ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- A bare-metal Python library for building and manipulating the molecular structures of proteins, nucleic acids, and small organic molecule…☆20Updated this week
- ☆15Sep 29, 2025Updated 8 months ago
- PLM based active learning model for protein engineering☆86Aug 6, 2024Updated last year