johnnytam100 / AlphaCutterLinks
This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
☆15Updated 2 years ago
Alternatives and similar repositories for AlphaCutter
Users that are interested in AlphaCutter are comparing it to the libraries listed below
Sorting:
- ☆28Updated 8 months ago
- Code for deep learning guided design of dynamic proteins☆30Updated last year
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆38Updated this week
- ☆41Updated last month
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆17Updated 6 months ago
- bakerlab pymol scripts☆24Updated 5 years ago
- ☆15Updated 6 months ago
- ☆20Updated 3 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated last year
- Explicit crosslinks in AlphaFold 3☆23Updated 6 months ago
- ☆24Updated 4 months ago
- Some scripts that I keep using over and over.☆20Updated 3 months ago
- Explore protein fold space with deep generative models☆16Updated last year
- Extension of ThermoMPNN for double mutant predictions☆43Updated 2 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆34Updated 3 weeks ago
- ☆23Updated last month
- ☆14Updated last week
- ☆14Updated 4 months ago
- An accurate and efficient protein sequence design approach☆25Updated 6 months ago
- Generative diverse protein backbones by protein language model☆33Updated 9 months ago
- ☆16Updated 9 months ago
- ☆28Updated 9 months ago
- Modelling protein conformational landscape with Alphafold☆53Updated last month
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆39Updated last month
- ☆13Updated 2 years ago
- Making Protein folding accessible to all!☆24Updated last year
- ☆39Updated last year
- ☆41Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆21Updated 7 months ago