This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
☆15Jul 25, 2023Updated 3 years ago
Alternatives and similar repositories for AlphaCutter
Users that are interested in AlphaCutter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 8 months ago
- ☆24Updated this week
- ☆51Sep 25, 2024Updated last year
- This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence …☆15Apr 20, 2023Updated 3 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction☆34Mar 18, 2025Updated last year
- Local Interaction Score (LIS) for structure prediction analysis☆84Jul 28, 2026Updated 2 weeks ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Dec 14, 2023Updated 2 years ago
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆17Updated this week
- Predict disorder and disorder binding from AlphaFold structures☆20Nov 25, 2024Updated last year
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 5 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- A novel approach to the classification of antimicrobial peptides (AMPs) using pre-trained language models to create contextual vectorized…☆18Sep 10, 2024Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆54Jun 22, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆318Jun 16, 2026Updated last month
- ☆17Aug 20, 2024Updated last year
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 2 months ago
- ☆47Sep 16, 2024Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 3 months ago
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆18May 7, 2025Updated last year
- Bi-Encoder approach for large-scale protein-peptide binding search☆13Jun 14, 2024Updated 2 years ago
- Toolkit for alphafold3 input and output files☆106Jul 31, 2026Updated last week
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.☆24Mar 24, 2026Updated 4 months ago
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆30Jul 20, 2025Updated last year
- ☆12Jun 16, 2023Updated 3 years ago
- The pytorch code of TDFold☆21Feb 25, 2026Updated 5 months ago
- Code for running PottsMPNN to generate sequences and predict energies