Alternatives and similar repositories for AlphaCutter

Users that are interested in AlphaCutter are comparing it to the libraries listed below

• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆19Updated last week
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated last month
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• PKUliujl / GeoSeqBuilder
  ☆28Updated 5 months ago
• Gonglab-THU / GDFold2
  ☆15Updated 6 months ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• anirudhvenk / antibody-dpo
  ☆22Updated last month
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated 11 months ago
• KhondamirRustamov / FoldCraft
  ☆34Updated 2 weeks ago
• rdkibler / superfold
  ☆13Updated last month
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆24Updated 5 years ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆24Updated 4 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated 3 weeks ago
• davidekim / parametric_barrels
  ☆13Updated 5 months ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆18Updated 4 months ago
• meilerlab / probabilities_design
  ☆13Updated 3 months ago
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆67Updated 10 months ago
• Furman-Lab / PatchMAN
  ☆26Updated this week
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• masoudk / AsiteDesign
  ☆13Updated last year
• oxpig / Humatch
  Fast, gene-specific joint humanisation of antibody heavy and light chains.
  ☆16Updated 7 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆40Updated last month
• ohuelab / ColabDesign-cyclic-binder
  ☆33Updated last year
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated last year
• bene837 / af2seq
  ☆43Updated 10 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆36Updated 2 weeks ago
• atommoyer / stapler
  A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins
  ☆20Updated last year
• ibmm-unibe-ch / glycosylator
  A Python framework for the rapid modeling of glycans
  ☆15Updated 5 months ago