☆218Sep 24, 2024Updated last year
Alternatives and similar repositories for ByProt
Users that are interested in ByProt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆204Sep 18, 2024Updated last year
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 3 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆626Mar 8, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Family of Diffusion Protein Language Models (DPLM)☆343Jul 25, 2025Updated last year
- ☆110Apr 1, 2023Updated 3 years ago
- Aligning protein generative models with experimental fitness☆143Mar 12, 2026Updated 5 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 6 months ago
- Making Protein Design accessible to all via Google Colab!☆934Updated this week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆264Mar 26, 2026Updated 5 months ago
- List of papers about Proteins Design using Deep Learning☆1,970Aug 15, 2026Updated 2 weeks ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆134Feb 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 3 years ago
- ☆145Jun 3, 2025Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆238Aug 27, 2025Updated last year
- A generative model for programmable protein design☆828Apr 11, 2024Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆330Jul 19, 2024Updated 2 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆565Dec 12, 2023Updated 2 years ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆682Jan 15, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆118Jan 3, 2026Updated 7 months ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆368Jun 29, 2023Updated 3 years ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆195Jun 24, 2024Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆149Nov 11, 2025Updated 9 months ago
- ☆64Sep 14, 2023Updated 2 years ago
- ☆255May 22, 2023Updated 3 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated last month
- Code for the ProteinMPNN paper☆1,835Aug 14, 2024Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆72Aug 4, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆240Dec 29, 2023Updated 2 years ago
- Protein Design with Guided Discrete Diffusion☆144Feb 21, 2024Updated 2 years ago
- Official release of the ProGen models☆705Jun 2, 2026Updated 2 months ago
- ☆100Oct 15, 2024Updated last year
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆107Jul 30, 2024Updated 2 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago