Alternatives and similar repositories for ByProt:

Users that are interested in ByProt are comparing it to the libraries listed below

• zhanghaicang / carbonmatrix_public
  ☆111Updated last month
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆91Updated last year
• wengong-jin / abdockgen
  ☆106Updated 2 years ago
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆177Updated last week
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆149Updated last year
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆190Updated 2 months ago
• wengong-jin / RefineGNN
  ☆130Updated 2 years ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆163Updated 2 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆214Updated 8 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆147Updated 6 months ago
• ai4protein / ProSST
  Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.
  ☆112Updated 2 months ago
• a-r-j / ProteinWorkshop
  Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …
  ☆232Updated last month
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆104Updated 2 months ago
• wengong-jin / DSMBind
  ☆87Updated 6 months ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆204Updated last year
• jertubiana / ScanNet
  ☆124Updated last year
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆91Updated 2 months ago
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆114Updated 5 months ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆97Updated 6 months ago
• levinthal / Pallatom
  ☆91Updated 5 months ago
• NVIDIA-Digital-Bio / proteina
  Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…
  ☆152Updated last month
• KyGao / awesome-docking
  An awesome & curated list of docking papers
  ☆109Updated last month
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆112Updated last month
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆136Updated last year
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆130Updated last year
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆86Updated 4 months ago
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆64Updated this week
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆74Updated 10 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆97Updated last month
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago