daewoooo / SVbyEye
☆76Updated 3 weeks ago
Alternatives and similar repositories for SVbyEye:
Users that are interested in SVbyEye are comparing it to the libraries listed below
- A tool for evaluate long-read de novo assembly results☆43Updated 6 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated last month
- TSEBRA: Transcript Selector for BRAKER☆47Updated 4 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated 2 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆43Updated 8 years ago
- Predict 5mC in PacBio HiFi reads☆1Updated last month
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- TGS scaffolding☆46Updated 3 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- A program to call variants from genome alignment☆79Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- ☆61Updated last week
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated last year
- Identification of transposable element families from pangenome polymorphisms☆44Updated last week
- A program for assessing the T2T genome continuity☆69Updated 2 weeks ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last month
- A organelle de novo genome assembly toolkit☆55Updated 3 weeks ago
- ☆71Updated last week
- Simple pileup-based variant caller☆88Updated 3 weeks ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆98Updated this week
- Neural network classification of TE☆87Updated 2 years ago
- ☆76Updated 4 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 8 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 3 months ago