daewoooo / SVbyEye
☆75Updated 4 months ago
Alternatives and similar repositories for SVbyEye:
Users that are interested in SVbyEye are comparing it to the libraries listed below
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆71Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆96Updated 3 weeks ago
- ☆43Updated 8 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated last month
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆46Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- A tool for evaluate long-read de novo assembly results☆43Updated 5 months ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 3 months ago
- ☆61Updated last week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆93Updated this week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- ☆76Updated 4 years ago
- Identification of transposable element families from pangenome polymorphisms☆44Updated 6 months ago
- Show pangenome graphs in an easy way☆54Updated 2 years ago
- TGS scaffolding☆46Updated 3 years ago
- ☆69Updated last week
- Mumemto: multi-MUM and MEM finding across pangenomes☆67Updated this week
- A program to call variants from genome alignment☆78Updated 10 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- A organelle de novo genome assembly toolkit☆53Updated 2 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated 2 weeks ago
- A tool for evaluating long-read de novo assembly results☆31Updated 5 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- Simple pileup-based variant caller☆86Updated 10 months ago
- ☆29Updated last month
- RepeatIdentifier☆55Updated 9 months ago