Alternatives and similar repositories for SVbyEye:

Users that are interested in SVbyEye are comparing it to the libraries listed below

• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆72Updated 4 years ago
• kjenike / panagram
  ☆61Updated last month
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 3 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 5 months ago
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆102Updated last month
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆55Updated 2 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆7Updated 3 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆48Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆33Updated 2 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆66Updated 3 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆111Updated 2 weeks ago
• rhysf / Synima
  Synteny Imager
  ☆61Updated 8 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆72Updated 3 weeks ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆81Updated 3 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆94Updated 2 months ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆59Updated 2 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆89Updated last week
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆68Updated last month
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 3 years ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆46Updated 8 months ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆43Updated 2 months ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆114Updated 11 months ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆88Updated 2 years ago
• DessimozLab / OMArk
  ☆71Updated last month
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year