FerRacimo / GRoSSLinks
Graph-aware Retrieval of Selective Sweeps
☆22Updated last year
Alternatives and similar repositories for GRoSS
Users that are interested in GRoSS are comparing it to the libraries listed below
Sorting:
- Infer demographic history with the Moran model☆51Updated 7 months ago
- Assessing confidence in introgression among four populations☆28Updated 4 years ago
- GONE: Scripts, programs and an example data set☆51Updated 6 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Updated 2 years ago
- ☆24Updated 8 years ago
- Tools and Utilities for msmc and msmc2☆50Updated 2 weeks ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- Quantifying Introgression via Branch Lengths☆56Updated 3 years ago
- ☆32Updated 3 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆42Updated last year
- Population genetics analyses from NGS data☆26Updated 4 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Topology weighting from unphased genotypes of any ploidy☆20Updated last month
- Simple tool for capturing alignment regions with sufficient quality for genotyping.☆22Updated 4 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆29Updated 2 weeks ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 3 months ago
- ☆46Updated 3 months ago
- ☆13Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- Joint inference of heterozygosity rates and runs of homozygosity☆17Updated last month
- Hybridization detection using phylogenetic invariants☆52Updated last year
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago