Infer the age of ancestral nodes in a tree sequence.
☆24Feb 3, 2026Updated 3 weeks ago
Alternatives and similar repositories for tsdate
Users that are interested in tsdate are comparing it to the libraries listed below
Sorting:
- Infer a tree sequence from genetic variation data.☆60Updated this week
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆28Dec 5, 2024Updated last year
- Maximum a posteriori estimate of contamination for ancient samples☆23Nov 4, 2025Updated 3 months ago
- Drawing functions for Demes demographic models☆24Updated this week
- The cattle Genotype-Tissue Expression atlas v1☆28Mar 14, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Dec 20, 2025Updated 2 months ago
- SHOOT.bio - the phylogenetic search engine☆27Jun 1, 2023Updated 2 years ago
- Sampling and inference of genealogies with recombination☆53Jun 20, 2025Updated 8 months ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Simulate ARGs and genomic sequence data using population genetic models☆210Updated this week
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- Module for analysing admixture graphs☆29Apr 30, 2018Updated 7 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆19Apr 9, 2024Updated last year
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated 10 months ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Dec 18, 2025Updated 2 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- Software for estimating genome-wide genealogies for thousands of samples☆40Oct 17, 2025Updated 4 months ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆19Aug 6, 2025Updated 6 months ago
- A library of standard population genetic models☆139Feb 20, 2026Updated last week
- Tools for describing and manipulating demographic models.☆19May 18, 2025Updated 9 months ago
- Population-scale Ancestral Recombination Graph (ARG) library☆176Updated this week
- Within-species genome-wide dN/dS estimation from very many genomes☆23Oct 26, 2020Updated 5 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- ARG-based inference of selection using deep learning☆17Aug 31, 2023Updated 2 years ago
- A set of tutorials for msprime and tskit.☆21Updated this week
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 5 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.☆20May 10, 2023Updated 2 years ago
- A Unified Genealogy of Modern and Ancient Humans☆20Dec 10, 2025Updated 2 months ago