tskit-dev / tsdate
Infer the age of ancestral nodes in a tree sequence.
☆21Updated last month
Alternatives and similar repositories for tsdate:
Users that are interested in tsdate are comparing it to the libraries listed below
- Sampling and inference of genealogies with recombination☆29Updated 7 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated 2 years ago
- Ascertained Sequentially Markovian Coalescent☆16Updated 5 months ago
- ☆20Updated 7 months ago
- machine learning applications for dadi☆15Updated 3 months ago
- SNP genotyping in polyploids☆16Updated 4 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆39Updated 7 months ago
- Sweep Inference Framework (controlling for correlation)☆29Updated 10 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆11Updated last month
- Automated and distributed population genetic model inference from allele frequency spectra☆16Updated last month
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated last year
- ☆11Updated 5 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- ☆14Updated 2 years ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated 3 months ago
- Drawing functions for Demes demographic models☆20Updated 9 months ago
- PopSim consortium manuscript☆7Updated 4 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated last week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆26Updated 4 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Standalone tool and library allowing to work with barcoded linked-reads☆12Updated 5 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Convert HAL to VG☆22Updated 8 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- A derivative of GenomeScope2.0 modified to work with FastK☆9Updated last year
- A reimplementation of a classical PSMC method in python for educational purposes☆15Updated 9 months ago
- The MafFilter genome alignment processor☆18Updated last week