tskit-dev / tsdate
Infer the age of ancestral nodes in a tree sequence.
☆19Updated this week
Alternatives and similar repositories for tsdate:
Users that are interested in tsdate are comparing it to the libraries listed below
- Minimizer-based assembly scaffolding and mapping using long reads☆34Updated 3 months ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Two locus likelihoods and ARGs under changing population size☆13Updated 3 years ago
- Ascertained Sequentially Markovian Coalescent☆15Updated last month
- Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.☆15Updated this week
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆50Updated 9 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 2 months ago
- Reference genome quality scores☆19Updated 4 years ago
- reference free variant assembly☆32Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- a short graduate population biology course☆12Updated last year
- Filter of Pairwise Alignement☆44Updated 2 years ago
- ☆13Updated 4 months ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆11Updated 10 months ago
- fastest GTF/GFF-to-BED converter chilling around☆21Updated this week
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 3 years ago
- base-level dotplots from PAF alignments☆23Updated 2 years ago
- SNP genotyping in polyploids☆16Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Convert HAL to VG☆21Updated 5 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆14Updated 10 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 2 months ago
- ☆19Updated 4 months ago
- convert PAF format to CHAIN format☆26Updated last month
- k-mer similarity analysis pipeline☆20Updated this week
- Standalone tool and library allowing to work with barcoded linked-reads☆12Updated last month
- ☆12Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆27Updated 2 weeks ago
- Sweep Inference Framework (controlling for correlation)☆29Updated 6 months ago