tskit-dev / tsdateLinks
Infer the age of ancestral nodes in a tree sequence.
☆24Updated this week
Alternatives and similar repositories for tsdate
Users that are interested in tsdate are comparing it to the libraries listed below
Sorting:
- machine learning applications for dadi☆16Updated last year
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Updated 9 months ago
- The MafFilter genome alignment processor☆19Updated last month
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Demographic inference from whole genomes☆13Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- ☆15Updated 2 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- A reimplementation of a classical PSMC method in python for educational purposes☆17Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆28Updated last year
- Convert HAL to VG☆23Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Reference bias measuring toolkit☆20Updated 9 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- convert PAF format to CHAIN format☆34Updated 8 months ago
- profile the repeat landscape in a genome☆16Updated 11 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated last year
- Better Alignments with Translated HMMER☆24Updated this week
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- Genome-wide scan for balancing selection using beta statistic☆32Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 5 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago