tskit-dev / tsdateLinks
Infer the age of ancestral nodes in a tree sequence.
☆24Updated 3 months ago
Alternatives and similar repositories for tsdate
Users that are interested in tsdate are comparing it to the libraries listed below
Sorting:
- Demographic inference from whole genomes☆13Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- The MafFilter genome alignment processor☆19Updated this week
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- machine learning applications for dadi☆16Updated 11 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆16Updated 9 months ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- Convert HAL to VG☆23Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- ☆15Updated 2 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆22Updated last month
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Updated 2 months ago
- Generate interactive dotplot from mummer4 output using plotly☆27Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14Updated 2 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- Better Alignments with Translated HMMER☆24Updated this week
- Consensus genome annotation using OMA☆31Updated 6 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆36Updated 2 months ago
- Computational Pangenomics☆17Updated 3 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated last month
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 8 months ago
- transposable element typing pipeline☆19Updated last year
- ☆21Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 10 months ago