ryhui / imputation-pipeline
☆10Updated 4 years ago
Alternatives and similar repositories for imputation-pipeline:
Users that are interested in imputation-pipeline are comparing it to the libraries listed below
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 5 months ago
- faster haplotype-based admixture inference and dating software☆9Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆11Updated 6 years ago
- Repository for pipeline code☆25Updated last year
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆19Updated last year
- ☆23Updated last year
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Updated 4 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆14Updated last year
- R-package: Calculation of haplotype blocks and libraries☆30Updated 2 months ago
- Population-wide Deletion Calling☆35Updated 3 weeks ago
- Bayesian reconstruction of ancient DNA fragments☆28Updated 9 months ago
- A series of scripts to automate sequence workflows☆19Updated 3 weeks ago
- Evaluation of phasing performance☆22Updated 7 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Updated 3 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 6 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 8 months ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆11Updated last month
- Repo to analyze population genetic data with many different methods☆15Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago