Alternatives and similar repositories for imputation-pipeline:

Users that are interested in imputation-pipeline are comparing it to the libraries listed below

• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆24Updated 5 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated 2 weeks ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 months ago
• jaredgk / PPP
  Repository for pipeline code
  ☆24Updated last year
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆11Updated 6 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• kaspermunch / PopulationGenomicsCourse
  Course in population genomics at BiRC
  ☆12Updated this week
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 3 months ago
• oeco28 / Cacao_Genomics
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆11Updated 6 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• yangjl / GERP-diallel
  Research repo for Yang et al., 2017 paper.
  ☆9Updated 5 years ago
• ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
  A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…
  ☆19Updated last year
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• GenisGE / evalAdmix
  ☆12Updated 10 months ago
• Popgen48 / scalepopgen
  ☆22Updated 11 months ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 5 years ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆15Updated last month
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆17Updated 5 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago
• GonzalezLab / T-lex3
  ☆15Updated 4 years ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 5 years ago
• evodify / genotype-files-manipulations
  Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.
  ☆10Updated 4 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated last year
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• xhhuanglab / QTN_scripts
  ☆9Updated 4 years ago
• winni2k / GLPhase
  A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples
  ☆10Updated 4 years ago
• jdaron / CLARI-TE
  ☆10Updated 10 years ago