☆11Jun 26, 2020Updated 5 years ago
Alternatives and similar repositories for imputation-pipeline
Users that are interested in imputation-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 7, 2025Updated 9 months ago
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Feb 29, 2024Updated 2 years ago
- Ancestry and Kinship Tools☆70Nov 16, 2022Updated 3 years ago
- ☆11Mar 8, 2026Updated last month
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Scripts to convert between file formats for various analyses☆16May 10, 2025Updated 11 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆55Dec 19, 2023Updated 2 years ago
- an R package for admixture analyses☆18May 15, 2015Updated 10 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated 10 months ago
- ☆17Nov 26, 2023Updated 2 years ago
- software for the MAPS method☆25Mar 20, 2019Updated 7 years ago
- Course in population genomics at BiRC☆12Mar 18, 2026Updated 3 weeks ago
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated last week
- ☆21Dec 15, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆23Oct 30, 2022Updated 3 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Aug 25, 2022Updated 3 years ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆18Feb 11, 2026Updated 2 months ago
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 4 years ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated 8 months ago
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 10 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Pan-genome Construction and Population Structure Variation Calling pipeline☆46Sep 13, 2024Updated last year
- Imputation-beagle-tutorial☆38Jun 2, 2022Updated 3 years ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆99Dec 21, 2025Updated 3 months ago
- A pipeline that accepts a VCF file to run through Admixture☆64Jan 2, 2025Updated last year
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆98Aug 28, 2023Updated 2 years ago
- Complex structural variant detection from WGS data☆31Jan 10, 2025Updated last year
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- Scalable population structure inference☆18Oct 22, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for gathering SLURM statistics☆23Oct 6, 2018Updated 7 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 4 years ago
- Storm Database Explorer - Developing Data Products course project.☆11May 3, 2017Updated 8 years ago
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆36Dec 4, 2023Updated 2 years ago
- fastest GTF/GFF-to-BED converter chilling around☆32Mar 19, 2026Updated 3 weeks ago
- Nextflow pipeline to process long read ONT and/or pacbio HiFi data☆18Mar 31, 2026Updated 2 weeks ago