Alternatives and similar repositories for imputation-pipeline:

Users that are interested in imputation-pipeline are comparing it to the libraries listed below

• hellenthal-group-UCL / fastGLOBETROTTER
  faster haplotype-based admixture inference and dating software
  ☆9Updated 3 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 months ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 3 months ago
• Gabaldonlab / jloh
  A tool to extract LOH blocks from VCF, BAM and FASTA data
  ☆21Updated 6 months ago
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆11Updated 6 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆25Updated 5 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated 8 months ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 4 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆24Updated last year
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆14Updated 2 years ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated 4 years ago
• ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
  A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…
  ☆19Updated last year
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆29Updated 10 months ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆28Updated 3 years ago
• grenaud / leeHom
  Bayesian reconstruction of ancient DNA fragments
  ☆27Updated 7 months ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆22Updated 7 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 6 months ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated 10 months ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆17Updated 5 years ago
• CGRL-QB3-UCBerkeley / PopGenTools
  SNP/Genotype calling based on ANGSD && downstream analyses
  ☆9Updated 10 years ago
• xhhuanglab / QTN_scripts
  ☆9Updated 4 years ago
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 4 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆24Updated 4 years ago
• jdaron / CLARI-TE
  ☆10Updated 10 years ago