ARG-Needle library for representing and analyzing ancestral recombination graphs (ARGs)
☆10Nov 21, 2025Updated 10 months ago
Alternatives and similar repositories for arg-needle-lib
Users that are interested in arg-needle-lib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆28Jul 8, 2022Updated 4 years ago
- Ascertained Sequentially Markovian Coalescent☆19Oct 22, 2025Updated 11 months ago
- ☆16Aug 25, 2026Updated last month
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Detection and classification selective sweep use domain adaptive model☆11Apr 29, 2024Updated 2 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- STICI source code☆26Jan 13, 2026Updated 9 months ago
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆15Sep 2, 2021Updated 5 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- ☆12Aug 3, 2025Updated last year
- ☆11Feb 14, 2023Updated 3 years ago
- ☆33Jan 5, 2023Updated 3 years ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Aug 9, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- A deletion and duplication caller from NGS paired-end data.☆14Aug 22, 2025Updated last year
- Fast inference of fine-scale recombination rates based on fused-LASSO☆63Feb 10, 2026Updated 8 months ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- ☆14Mar 7, 2021Updated 5 years ago
- ☆35Nov 11, 2025Updated 11 months ago
- ☆11Oct 23, 2024Updated last year
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 3 years ago
- Repository for the Sequoia phylogeny reconstruction pipeline☆11Feb 17, 2026Updated 8 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- ☆37Nov 30, 2023Updated 2 years ago
- Recomb-Mix: a local ancestry inference tool☆18Sep 1, 2026Updated last month
- iLASH - IBD Estimation Using Locality Sensitive Hashing☆18Nov 6, 2025Updated 11 months ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- ☆18Apr 26, 2026Updated 5 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆20Mar 31, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format☆14Aug 5, 2025Updated last year
- Rust bindings for the tskit library☆18Oct 13, 2026Updated last week
- ☆12Nov 23, 2020Updated 5 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- Linear mixed models on ARGs☆18Jan 16, 2026Updated 9 months ago
- ☆16Mar 20, 2023Updated 3 years ago