☆16Oct 16, 2017Updated 8 years ago
Alternatives and similar repositories for TreeWAS
Users that are interested in TreeWAS are comparing it to the libraries listed below
Sorting:
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- R package to estimate kinship and FST from SNP data☆21Jan 27, 2026Updated last month
- Pinpoints the mutation favored by selection☆34Nov 2, 2021Updated 4 years ago
- ☆13Feb 12, 2026Updated 2 weeks ago
- ☆12Aug 23, 2023Updated 2 years ago
- Single sample network reconstruction in R☆24Apr 6, 2020Updated 5 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- ☆13Nov 30, 2018Updated 7 years ago
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 7 years ago
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Apr 11, 2019Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- Counterfactual Inference by Machine Learning and Attribution Models☆14Aug 24, 2023Updated 2 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- Structured Linear Mixed Model is a method to test for loci that interact with multiple environments.☆14Sep 16, 2020Updated 5 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 4 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 4 months ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, bi…☆13Dec 21, 2017Updated 8 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Library and command line scripts for fitting heteroskedastic linear mixed models to genetic data. Can be used to perform GWAS for genetic…☆18Sep 13, 2018Updated 7 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 10 months ago
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 8 years ago
- An R interface for the ADMIXTOOLS software☆35Nov 24, 2025Updated 3 months ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 8 years ago
- ☆16Apr 3, 2023Updated 2 years ago
- ☆12Sep 24, 2020Updated 5 years ago
- ☆16Sep 14, 2023Updated 2 years ago
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 2 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 30, 2023Updated 2 years ago
- A complete tool set for molecular QTL discovery and analysis☆60Apr 16, 2024Updated last year
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆36Dec 4, 2023Updated 2 years ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 5 months ago