mcveanlab / TreeWASLinks
☆16Updated 7 years ago
Alternatives and similar repositories for TreeWAS
Users that are interested in TreeWAS are comparing it to the libraries listed below
Sorting:
- Get SNP proxies from the 1000 Genomes Project.☆30Updated 6 years ago
- ☆16Updated last year
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Statistical properties of polygenic risk scores☆19Updated 5 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- mitochondrial variant analysis tools☆14Updated 4 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Generalized linear Mixed Model Association Tests☆42Updated last year
- Simulation of rare and common variants based on 1000 genomes data☆19Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆29Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 10 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated this week
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆34Updated 7 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆13Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆34Updated 6 months ago
- Lollipop-diagram to interactively visualize genetic mutations☆32Updated 11 months ago
- GWAS and rare variants tests at high speed using regenie☆15Updated 8 months ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year