mcveanlab / TreeWASLinks
☆16Updated 8 years ago
Alternatives and similar repositories for TreeWAS
Users that are interested in TreeWAS are comparing it to the libraries listed below
Sorting:
- genetic correlation between phenotypes in the UK biobank☆13Updated last year
- Get SNP proxies from the 1000 Genomes Project.☆30Updated 7 years ago
- ☆16Updated 2 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Statistical properties of polygenic risk scores☆19Updated 6 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Interactive eQTL visualizations☆13Updated 2 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 5 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 2 weeks ago
- Generalized linear Mixed Model Association Tests☆44Updated 2 years ago
- tools to efficiently retrieve and calculate LD☆33Updated 4 years ago
- An interactive graphical illustration of genetic associations and their biological context☆17Updated last year
- ☆29Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Updated last year
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆31Updated 3 weeks ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated last month
- A Toolset for Chromosome X-Wide Association Studies☆12Updated 7 years ago
- Finding cryptic relationships to boost disease gene detection☆12Updated 2 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago