Rowena-h / BUSCOfilterLinks
A tool to filter BUSCO output into single-copy gene files for phylogenomics
☆13Updated last year
Alternatives and similar repositories for BUSCOfilter
Users that are interested in BUSCOfilter are comparing it to the libraries listed below
Sorting:
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆52Updated last month
- ContScout sequence contamination filter tool☆26Updated 3 weeks ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last week
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 4 months ago
- ☆22Updated 11 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- Multi-genome synteny block visualization tool☆52Updated 2 weeks ago
- Automatic evaluation of HGTs☆30Updated 11 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Diploid genome assembly analysis tools☆14Updated last year
- Tool for fully-automated inference of species trees from raw genome assemblies☆43Updated 2 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 3 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Updated last year
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Updated 5 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago