Selection outlier scan with population branch statistic
☆14Feb 21, 2024Updated 2 years ago
Alternatives and similar repositories for PBScan
Users that are interested in PBScan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 3 years ago
- ☆49Oct 17, 2025Updated last year
- ☆35Nov 11, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 5 years ago
- ☆11Jun 2, 2025Updated last year
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated 2 years ago
- Pinpoints the mutation favored by selection☆36Nov 2, 2021Updated 4 years ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated last year
- Course material for UBC Biol525D☆12Aug 15, 2019Updated 7 years ago
- ☆13Apr 30, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- msstats calculates many common popgen summary statistics from the output of the coalescent simulation "ms".☆10Jun 8, 2018Updated 8 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 8 years ago
- ☆11Jun 15, 2026Updated 4 months ago
- Prior-Oblivious Length Estimation in Genealogies with Oriented Network☆13Jan 22, 2025Updated last year
- Scripts to reproduce analyses of tradeSeq paper.☆17Feb 5, 2020Updated 6 years ago
- A software package for local ancestry inference and haplotype phasing☆46Apr 20, 2023Updated 3 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- ☆11Jul 4, 2022Updated 4 years ago
- predicting DFE and alpha from polymorphism data☆29Oct 4, 2018Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Jan 11, 2021Updated 5 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 13 years ago
- Nanopore data assembler☆171Mar 27, 2022Updated 4 years ago
- All codes associated with MendelPeaG2P project☆13Mar 5, 2025Updated last year
- Software for painlessly estimating average nucleotide diversity within and between populations☆170Sep 19, 2026Updated last month
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆40May 21, 2024Updated 2 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- Analysis of large inversions using SNP data☆10Jul 29, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 7 months ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆16Aug 11, 2023Updated 3 years ago
- Identification of segmental duplications in the genome☆29Mar 1, 2022Updated 4 years ago
- Sorting Intolerant From Tolerant For Genomes☆33Nov 3, 2017Updated 8 years ago
- ☆16Mar 20, 2023Updated 3 years ago
- Fast and accurate de novo assembler for long reads☆407May 10, 2024Updated 2 years ago