thamala / PBScan
Selection outlier scan with population branch statistic
☆13Updated last year
Alternatives and similar repositories for PBScan:
Users that are interested in PBScan are comparing it to the libraries listed below
- Automated pipeline for running CoalHMM☆12Updated last year
- ☆27Updated last week
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆9Updated last month
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆14Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated last month
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆28Updated 2 months ago
- ☆12Updated 2 years ago
- ☆12Updated 5 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Dynamic Elongation of a Genome Assembly Path☆21Updated 11 months ago
- ☆24Updated 2 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Updated 5 months ago
- ☆20Updated 8 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- Deleterious mutation prediction pipeline☆13Updated 4 months ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Updated 5 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- a Semi-automated pipeline for assembling T2T genome☆15Updated last week
- Toolkit for evolutionary analyses of linkage groups☆30Updated 9 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆22Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 6 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago