Selection outlier scan with population branch statistic
☆15Feb 21, 2024Updated 2 years ago
Alternatives and similar repositories for PBScan
Users that are interested in PBScan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated last year
- Pinpoints the mutation favored by selection☆34Nov 2, 2021Updated 4 years ago
- ☆34Nov 11, 2025Updated 4 months ago
- ☆48Oct 17, 2025Updated 5 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- BITE: BioInformatics tools for everyone☆22Jul 25, 2024Updated last year
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆11Jul 4, 2022Updated 3 years ago
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- Topology weighting by iterative sampling of sub-trees☆87Jan 5, 2025Updated last year
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆84Dec 3, 2025Updated 4 months ago
- ☆29Aug 7, 2025Updated 8 months ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- A repo contains historical and updated MTEC libraries.☆18Feb 6, 2020Updated 6 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆16Nov 25, 2019Updated 6 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated 8 months ago
- ☆15Mar 20, 2023Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 7 months ago
- A software package for local ancestry inference and haplotype phasing☆44Apr 20, 2023Updated 2 years ago
- ☆17Dec 2, 2015Updated 10 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Oct 12, 2024Updated last year
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆18Apr 1, 2024Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 9 months ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Graph-based Sequence Assembly Toolkit☆22Feb 24, 2026Updated last month
- software for the MAPS method☆25Mar 20, 2019Updated 7 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Apr 2, 2026Updated last week
- conserved non-coding sequence☆16Feb 21, 2022Updated 4 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago