Alternatives and similar repositories for pathPhynder:

Users that are interested in pathPhynder are comparing it to the libraries listed below

• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 4 months ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 10 months ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆16Updated this week
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated 9 months ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 4 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆30Updated 10 months ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆43Updated 5 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆27Updated 3 weeks ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 5 years ago
• tsackton / linked-selection
  ☆24Updated 7 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆43Updated last year
• therkildsen-lab / lcwgs-simulation
  ☆16Updated 2 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆33Updated 3 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆29Updated 3 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆34Updated last year
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆15Updated this week
• grenaud / ROHan
  Joint inference of heterozygosity rates and runs of homozygosity
  ☆11Updated 4 months ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆48Updated this week
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆51Updated this week
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆23Updated 10 months ago
• speciationgenomics / presentations
  Presentations from the course
  ☆36Updated last year
• clairemerot / angsd_pipeline
  ☆26Updated last year
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 5 years ago