ruidlpm / pathPhynderLinks
A workflow for integrating ancient lineages into present-day phylogenies.
☆29Updated 2 months ago
Alternatives and similar repositories for pathPhynder
Users that are interested in pathPhynder are comparing it to the libraries listed below
Sorting:
- Infer demographic history with the Moran model☆48Updated 3 months ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Hybridization detection using phylogenetic invariants☆48Updated 10 months ago
- Tools and Utilities for msmc and msmc2☆48Updated last month
- Presentations from the course☆37Updated 2 years ago
- RADseq workflow using STACKS☆58Updated last week
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 2 years ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- ☆52Updated 3 months ago
- ☆41Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated 11 months ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- GONE: Scripts, programs and an example data set☆46Updated 2 months ago
- ☆31Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 8 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- ☆19Updated 3 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last month
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 4 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago