A workflow for integrating ancient lineages into present-day phylogenies.
☆32Jul 24, 2026Updated this week
Alternatives and similar repositories for pathPhynder
Users that are interested in pathPhynder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow for processing Illumina sequencing runs for ancient human DNA☆27Oct 29, 2020Updated 5 years ago
- ☆11Jun 26, 2020Updated 6 years ago
- Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data☆37Jun 24, 2026Updated last month
- ☆24Jun 9, 2021Updated 5 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆21Apr 9, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Time-stratified f-statistics☆17Aug 1, 2025Updated 11 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.☆30Aug 15, 2025Updated 11 months ago
- Heuristic search algorithm for fitting qpGraph models☆11Aug 4, 2022Updated 3 years ago
- Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improv…☆13Dec 2, 2024Updated last year
- Method for dating admixture in ancient DNA specimens☆33Jan 12, 2022Updated 4 years ago
- ☆53May 12, 2026Updated 2 months ago
- Tools test whether admixture occurred and more☆232Jul 13, 2026Updated last week
- ☆15Mar 13, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- YFull YTree☆22Jul 15, 2026Updated last week
- The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource☆47Jul 15, 2019Updated 7 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆25Nov 4, 2025Updated 8 months ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 9 years ago
- BITE: BioInformatics tools for everyone☆22Jul 25, 2024Updated 2 years ago
- ☆20Sep 10, 2020Updated 5 years ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆212Updated this week
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆14Sep 4, 2024Updated last year
- Pinpoints the mutation favored by selection☆35Nov 2, 2021Updated 4 years ago
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆17Jul 17, 2026Updated last week
- Rapid population clustering with autoencoders☆89Sep 29, 2025Updated 9 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 4 months ago
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- principal components population genetics analysis on linux☆21Aug 29, 2021Updated 4 years ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 8 months ago
- An aDNA aware short-read mapper☆22Apr 22, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Low Coverage Calling of Genotypes☆176Updated this week
- Software to call ROHs☆20Updated this week
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆51Jul 14, 2025Updated last year
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 3, 2026Updated 3 weeks ago
- A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.☆14May 3, 2019Updated 7 years ago
- ☆14Dec 3, 2024Updated last year
- Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men☆126Updated this week