Alternatives and similar repositories for pathPhynder

Users that are interested in pathPhynder are comparing it to the libraries listed below

• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆35Updated last year
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆48Updated last year
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 10 months ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated last year
• harvardinformatics / degenotate
  ☆50Updated last month
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆53Updated 2 years ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆43Updated 2 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆51Updated 7 years ago
• tsackton / linked-selection
  ☆24Updated 8 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆61Updated 6 months ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆47Updated 8 months ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆48Updated last year
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 4 years ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆57Updated last month
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆42Updated 6 years ago
• clairemerot / angsd_pipeline
  ☆26Updated 2 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆39Updated last year
• russcd / Ancestry_HMM
  ☆30Updated 2 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 2 months ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated last month
• esayyari / DiscoVista
  ☆40Updated last year
• grenaud / ROHan
  Joint inference of heterozygosity rates and runs of homozygosity
  ☆15Updated 10 months ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• RILAB / mop
  Simple tool for capturing alignment regions with sufficient quality for genotyping.
  ☆21Updated 3 years ago