BITE: BioInformatics tools for everyone
☆21Jul 25, 2024Updated last year
Alternatives and similar repositories for BITE
Users that are interested in BITE are comparing it to the libraries listed below
Sorting:
- Module for analysing admixture graphs☆29Apr 30, 2018Updated 7 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆19Apr 9, 2024Updated last year
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 4 years ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 7, 2025Updated 7 months ago
- ☆13Apr 30, 2019Updated 6 years ago
- Template for DESeq2 Analysis of RNA-seq data☆16Mar 29, 2019Updated 6 years ago
- PNNL TES incubation of CPCRW soil cores #openexperiment☆12Aug 29, 2017Updated 8 years ago
- population genetic simulations with R and Shiny☆28Nov 3, 2024Updated last year
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- analysis and plotting code for "Admixture into and within Africa" by George Busby et al 2016 (eLife)☆12Jun 16, 2016Updated 9 years ago
- ☆15Feb 26, 2026Updated last week
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Time-stratified f-statistics☆15Aug 1, 2025Updated 7 months ago
- Pinpoints the mutation favored by selection☆34Nov 2, 2021Updated 4 years ago
- method for modeling continuous and discrete population genetic structure☆38Jan 8, 2024Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. PopGenome — An Efficient Swiss Army Knife for Population Genomic Analyses …☆16Feb 3, 2020Updated 6 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Aug 29, 2017Updated 8 years ago
- An R Package to build and simulate coalescent models☆20Feb 19, 2026Updated 2 weeks ago
- Tutorial on using popular tools for learning about population history☆53Jul 18, 2018Updated 7 years ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- Mutual nearest neighbor graphs and data visualization for genomic population networks☆17Feb 6, 2022Updated 4 years ago
- ☆51Feb 18, 2026Updated 2 weeks ago
- an R package for admixture analyses☆18May 15, 2015Updated 10 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Oct 24, 2019Updated 6 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated last year
- A set of tutorials for msprime and tskit.☆21Feb 24, 2026Updated last week
- This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.☆26Aug 15, 2025Updated 6 months ago
- Drawing functions for Demes demographic models☆24Updated this week
- Genetic Algorithm for Demographic Model Analysis☆54Feb 3, 2026Updated last month
- A Grammar of Interactive Graphics☆22Oct 9, 2017Updated 8 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Dec 11, 2022Updated 3 years ago
- The SPrime program identifies variants that are introgressed from archaic populations.☆27May 21, 2022Updated 3 years ago
- software for the MAPS method☆25Mar 20, 2019Updated 6 years ago
- Assessing confidence in introgression among four populations☆28Apr 19, 2021Updated 4 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆185Dec 19, 2024Updated last year
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Genealogical Estimation of Variant Age (GEVA)☆32Sep 30, 2021Updated 4 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Jan 4, 2025Updated last year