Alternatives and similar repositories for ohana

Users that are interested in ohana are comparing it to the libraries listed below

• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated last year
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• stschiff / msmc
  Implementation of the multiple sequential markovian coalescent
  ☆89Updated 2 months ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆106Updated last year
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆63Updated 11 months ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 8 months ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated last month
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆68Updated 5 years ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆59Updated last week
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• bpp / bpp
  Bayesian analysis of genomic sequence data under the multispecies coalescent model
  ☆106Updated 2 weeks ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated 2 years ago
• fgvieira / ngsLD
  Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
  ☆47Updated last year
• russcd / Ancestry_HMM
  ☆31Updated 2 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆28Updated 6 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆30Updated last month
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆116Updated 11 months ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆132Updated this week
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆81Updated 9 months ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆62Updated 9 months ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• uqrmaie1 / admixtools
  ☆83Updated 4 months ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated 2 months ago
• BenjaminPeter / rangeexpansion
  ☆13Updated 8 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆47Updated 2 months ago
• halasadi / MAPS
  software for the MAPS method
  ☆24Updated 6 years ago