Alternatives and similar repositories for ohana:

Users that are interested in ohana are comparing it to the libraries listed below

• szpiech / selscan
  Haplotype based scans for selection
  ☆123Updated this week
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 3 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆78Updated 8 months ago
• stschiff / msmc
  Implementation of the multiple sequential markovian coalescent
  ☆87Updated last year
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆54Updated last month
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆108Updated 5 months ago
• tatumdmortimer / popgen-stats
  Scripts to calculate population genetics statistics
  ☆55Updated 6 years ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆103Updated last year
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 9 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆58Updated 5 months ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 2 months ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆65Updated 11 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• speciationgenomics / presentations
  Presentations from the course
  ☆36Updated last year
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆128Updated this week
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆76Updated 3 months ago
• xiaoming-liu / stairway-plot-v2
  The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…
  ☆41Updated last year
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆64Updated 2 years ago
• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆170Updated 4 months ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated this week
• ramachandran-lab / pong
  Fast analysis and visualization of latent clusters in population genetic data
  ☆74Updated 3 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 6 months ago
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆148Updated 8 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆163Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last week
• bpp / bpp
  Bayesian analysis of genomic sequence data under the multispecies coalescent model
  ☆96Updated 3 weeks ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated last week
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆95Updated 2 years ago