Alternatives and similar repositories for ohana

Users that are interested in ohana are comparing it to the libraries listed below

• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆79Updated 8 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆86Updated 3 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆59Updated 6 months ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 3 months ago
• nt246 / lcwgs-guide-tutorial
  ☆85Updated 3 years ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆127Updated 3 weeks ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆103Updated last year
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆109Updated 6 months ago
• stschiff / msmc
  Implementation of the multiple sequential markovian coalescent
  ☆87Updated last year
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆65Updated last year
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 7 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• tatumdmortimer / popgen-stats
  Scripts to calculate population genetics statistics
  ☆55Updated 6 years ago
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆55Updated 2 weeks ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated last week
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆149Updated 9 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated last month
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 9 months ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• speciationgenomics / presentations
  Presentations from the course
  ☆36Updated last year
• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆171Updated 4 months ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆78Updated 4 months ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆58Updated last week
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated last year
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆129Updated last week
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated last week
• bpp / bpp
  Bayesian analysis of genomic sequence data under the multispecies coalescent model
  ☆97Updated 2 weeks ago