jade-cheng / ohanaLinks
mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.
☆87Updated 4 years ago
Alternatives and similar repositories for ohana
Users that are interested in ohana are comparing it to the libraries listed below
Sorting:
- Methods for examining PCA locally along the genome.☆81Updated 10 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 8 months ago
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Repository for speciation genomics website☆25Updated 11 months ago
- A library for running k-mers based GWAS☆109Updated 7 months ago
- Haplotype based scans for selection☆130Updated 2 months ago
- Estimating Effective Migration Surfaces☆103Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆65Updated last year
- Scripts to calculate population genetics statistics☆55Updated 6 years ago
- RADseq workflow using STACKS☆57Updated last week
- ☆88Updated 3 years ago
- Presentations from the course☆37Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Topology weighting by iterative sampling of sub-trees☆79Updated 5 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆174Updated 6 months ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆154Updated 10 months ago
- a bash pipeline for RAD sequencing☆55Updated 4 months ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- Population genetic simulations in R 🌍☆59Updated last week
- Estimate recombination rates from population genetic data☆67Updated 5 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 3 weeks ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆98Updated 3 years ago
- Shiny apps for teaching Population Genetics☆65Updated 2 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆135Updated last month