HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
☆11Sep 24, 2024Updated last year
Alternatives and similar repositories for HaploSweep
Users that are interested in HaploSweep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 4 months ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 6 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Jun 28, 2026Updated 3 weeks ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆17Sep 5, 2024Updated last year
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated 3 months ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 4 months ago
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated last year
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆21Apr 9, 2025Updated last year
- ☆15Jun 28, 2026Updated 3 weeks ago
- ☆21Dec 13, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Genotyping of paralog specific gene types☆22Nov 6, 2025Updated 8 months ago
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 7 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆29Aug 21, 2018Updated 7 years ago
- Accelerated Bayesian inference of population size history from whole genome data.☆37Apr 6, 2026Updated 3 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆70Apr 9, 2026Updated 3 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆14Apr 28, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆32Jul 1, 2026Updated 3 weeks ago
- A tool for quick and accurate calculation of syntenic diversity.☆45Sep 22, 2025Updated 10 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆49Oct 22, 2024Updated last year
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 8 months ago
- ☆11Sep 4, 2024Updated last year
- Software for estimating genome-wide genealogies for thousands of samples☆44May 19, 2026Updated 2 months ago
- Sampling and inference of genealogies with recombination☆57Apr 10, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆24Mar 17, 2026Updated 4 months ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jul 10, 2026Updated last week
- ☆11Sep 23, 2022Updated 3 years ago
- Time-stratified f-statistics☆17Aug 1, 2025Updated 11 months ago
- ☆17Jul 10, 2026Updated last week
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated 11 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆45Apr 28, 2026Updated 2 months ago