ChenHuaLab / HaploSweep
HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
☆9Updated 5 months ago
Alternatives and similar repositories for HaploSweep:
Users that are interested in HaploSweep are comparing it to the libraries listed below
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆14Updated this week
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆15Updated 3 weeks ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆16Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 4 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆16Updated last month
- Domain based annotation of transposable elements☆19Updated last month
- Genome alignment and synteny plots☆28Updated last year
- SINE annotation tool for plant genomes☆17Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- FastK based version of Merqury☆22Updated 2 weeks ago
- Toolkit for evolutionary analyses of linkage groups☆26Updated 7 months ago
- Construct and Analyze the North American Vitis pangenome☆22Updated last year
- ☆16Updated 2 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 6 months ago
- Selection outlier scan with population branch statistic☆13Updated last year
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated last year
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 9 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 11 months ago
- ☆22Updated 6 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last week