ChenHuaLab / HaploSweepLinks
HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
☆11Updated last year
Alternatives and similar repositories for HaploSweep
Users that are interested in HaploSweep are comparing it to the libraries listed below
Sorting:
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 5 months ago
- Construct and Analyze the North American Vitis pangenome☆29Updated 5 months ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated 2 years ago
- The MafFilter genome alignment processor☆19Updated last month
- Set of script for the paper on the cattle graph genome☆13Updated 3 years ago
- ☆12Updated 5 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Updated 10 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- plot genome alignment synteny☆21Updated 5 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Updated 6 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆13Updated 5 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Long Read Based SV Calling Tools Analysis☆14Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week
- ☆11Updated this week
- parallelLastz: Running Lastz in parallel☆17Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Ascertained Sequentially Markovian Coalescent☆16Updated 3 months ago
- ☆10Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago