gaitat / GenomeUPlot
The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.
☆31Updated last year
Related projects ⓘ
Alternatives and complementary repositories for GenomeUPlot
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Updated 5 years ago
- ☆23Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- Python package and routines for merging VCF files☆29Updated 3 years ago
- A tool for evaluating RNA seq mapping☆23Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- Genomic Association Tester☆29Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 2 weeks ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated 6 months ago
- Q ChIP-seq peak caller☆18Updated 4 months ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 2 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated last month
- ☆20Updated 7 years ago