gaitat / GenomeUPlotLinks
The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.
☆32Updated 3 years ago
Alternatives and similar repositories for GenomeUPlot
Users that are interested in GenomeUPlot are comparing it to the libraries listed below
Sorting:
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Updated 6 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- ☆29Updated 6 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 7 months ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Interactive table from gemini output☆10Updated 6 years ago
- Expanded STR algorithm for Illumina sequencing data☆23Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- An awk-like VCF parser☆56Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- sort genomic data☆36Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago