gaitat / GenomeUPlot
The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.
☆31Updated 2 years ago
Alternatives and similar repositories for GenomeUPlot:
Users that are interested in GenomeUPlot are comparing it to the libraries listed below
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Updated 5 years ago
- ☆23Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Genomic plot in trellis layout☆39Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- A command line tool to compute mapping statistics from a BAM file☆23Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Adapters for trimming☆30Updated 6 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Functions to compare a SV call sets against a truth set.☆29Updated 10 months ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated 10 months ago
- Personal diploid genome creation and coordinate conversion☆24Updated last month
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago