ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the human genome.
☆19Nov 4, 2019Updated 6 years ago
Alternatives and similar repositories for aloft
Users that are interested in aloft are comparing it to the libraries listed below
Sorting:
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- ☆191Jun 20, 2023Updated 2 years ago
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated last year
- Website to analyze conflicting assertions in ClinVar☆19Jan 24, 2026Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- Pipeline in place at the UGI for DNA level analysis☆11Aug 29, 2016Updated 9 years ago
- ☆12Jan 29, 2025Updated last year
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- K-means clustering for large single-cell datasets☆12Feb 10, 2026Updated 2 weeks ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 6 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 2 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆11Aug 15, 2024Updated last year
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 6 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Feb 10, 2026Updated 2 weeks ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆19Jan 5, 2018Updated 8 years ago
- ☆14Sep 11, 2023Updated 2 years ago
- The Simple Fool's Guide to population genomics using RNA-Seq☆28Jul 8, 2016Updated 9 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Feb 20, 2021Updated 5 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Jul 27, 2023Updated 2 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 8 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 7 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 7 years ago
- gnomAD browser pre-ASHG 2018☆33Nov 2, 2020Updated 5 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 9 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- ☆35Mar 2, 2021Updated 5 years ago
- Example R scripts to run burden and association analysis on array CNV data☆14Nov 9, 2016Updated 9 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago