szpiech / selscanLinks
Haplotype based scans for selection
☆130Updated last week
Alternatives and similar repositories for selscan
Users that are interested in selscan are comparing it to the libraries listed below
Sorting:
- Code to compute the XP-CLR statistic to infer natural selection☆98Updated 3 years ago
- A library for running k-mers based GWAS☆110Updated 8 months ago
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆97Updated 2 months ago
- Fast analysis and visualization of latent clusters in population genetic data☆75Updated 3 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆88Updated last year
- Same species annotation lift over pipeline.☆98Updated last year
- ☆88Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆193Updated 11 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆170Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆93Updated 7 months ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Scripts for analysis used during the course☆93Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- NLR-Annotator upload☆68Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated last month
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆36Updated 4 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆94Updated last year
- A pipeline that accepts a VCF file to run through Admixture☆61Updated 6 months ago
- Estimate recombination rates from population genetic data☆67Updated 5 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆102Updated 3 weeks ago
- web documentation for Trinotate☆48Updated 2 years ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 6 years ago
- a bash pipeline for RAD sequencing☆55Updated 5 months ago
- Methods for examining PCA locally along the genome.☆82Updated 11 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month