szpiech / selscanLinks
Haplotype based scans for selection
☆130Updated last month
Alternatives and similar repositories for selscan
Users that are interested in selscan are comparing it to the libraries listed below
Sorting:
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- A library for running k-mers based GWAS☆109Updated 7 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆97Updated 2 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆166Updated 2 years ago
- ☆86Updated 3 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆96Updated 3 weeks ago
- Fast analysis and visualization of latent clusters in population genetic data☆75Updated 3 years ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆81Updated this week
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- Same species annotation lift over pipeline.☆97Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆99Updated 3 weeks ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆90Updated 6 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆172Updated 5 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated this week
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Scripts for analysis used during the course☆92Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆192Updated 9 months ago
- a bash pipeline for RAD sequencing☆55Updated 4 months ago
- Documentation archive for GATK tools and workflows☆85Updated 5 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- NLR-Annotator upload☆66Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆65Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Segmented HAPlotype Estimation and Imputation Tool☆94Updated last year