software for the MAPS method
☆25Mar 20, 2019Updated 6 years ago
Alternatives and similar repositories for MAPS
Users that are interested in MAPS are comparing it to the libraries listed below
Sorting:
- method for modeling continuous and discrete population genetic structure☆38Jan 8, 2024Updated 2 years ago
- Estimating Effective Migration Surfaces☆110Oct 28, 2023Updated 2 years ago
- Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.381…☆15May 26, 2014Updated 11 years ago
- A package for population structure inference from RAD-seq data☆34May 14, 2021Updated 4 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- ☆32Jan 5, 2023Updated 3 years ago
- Automatically exported from code.google.com/p/macs☆17Oct 17, 2019Updated 6 years ago
- ☆12Mar 11, 2025Updated 11 months ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Genetic coordinates so simple, it feels like MAGIC!☆10Jan 29, 2026Updated last month
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- Faster multispecies coalescent inference using multilocus data☆14Aug 13, 2023Updated 2 years ago
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Sep 2, 2021Updated 4 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- ☆11Dec 24, 2024Updated last year
- Analysis scripts from the paper "Eight thousand years of natural selection in Europe".☆11Nov 19, 2015Updated 10 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 6 years ago
- starmie: plotting and inference for population structure models☆15Sep 20, 2018Updated 7 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆30Sep 27, 2019Updated 6 years ago
- Methods for examining PCA locally along the genome.☆88Aug 13, 2024Updated last year
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Nov 19, 2024Updated last year
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- Module for analysing admixture graphs☆29Apr 30, 2018Updated 7 years ago
- Identification of structural variations☆12Jul 22, 2022Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Feb 21, 2025Updated last year
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- Simulating Plasmodium Epidemiological and Genetic Data☆12Apr 3, 2023Updated 2 years ago
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated last year
- ☆15Jun 14, 2017Updated 8 years ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated 10 months ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- ☆15Mar 20, 2023Updated 2 years ago
- program to estimate admixture coefficients from individual genotype or sequence data☆33Sep 23, 2024Updated last year
- Utilities for analyzing next generation sequencing data.☆15May 7, 2021Updated 4 years ago