Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
☆45Oct 24, 2019Updated 6 years ago
Alternatives and similar repositories for hapbin
Users that are interested in hapbin are comparing it to the libraries listed below
Sorting:
- Haplotype based scans for selection☆140Updated this week
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 10 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated last month
- ☆32Jan 5, 2023Updated 3 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Dec 11, 2022Updated 3 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Pinpoints the mutation favored by selection☆34Nov 2, 2021Updated 4 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Oct 12, 2023Updated 2 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Aug 29, 2017Updated 8 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Nov 15, 2023Updated 2 years ago
- Programs to analyse NGS data for population genetics purposes☆179Aug 27, 2024Updated last year
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 4 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- Estimate population history parameters from site pattern frequencies.☆12Dec 2, 2025Updated 2 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆102Jun 13, 2022Updated 3 years ago
- ☆30Oct 14, 2022Updated 3 years ago
- A set of tools for modelling ancestry patterns along the genome.☆24Feb 20, 2026Updated last week
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- ☆12Sep 11, 2025Updated 5 months ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Estimate recombination rates from population genetic data☆71Jun 10, 2020Updated 5 years ago
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 3 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 9 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Feb 21, 2025Updated last year