evotools / hapbinLinks
Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
☆45Updated 5 years ago
Alternatives and similar repositories for hapbin
Users that are interested in hapbin are comparing it to the libraries listed below
Sorting:
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago
- ☆24Updated 7 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆23Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- ☆20Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Infer demographic history with the Moran model☆47Updated 3 months ago
- ☆43Updated 2 months ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆20Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 8 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆60Updated last month
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- ☆25Updated 3 months ago