Alternatives and similar repositories for GameteBinning:

Users that are interested in GameteBinning are comparing it to the libraries listed below

• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 4 months ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated 5 months ago
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆15Updated 5 months ago
• YaoZhou89 / WGSc
  ☆16Updated 3 years ago
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• ComparativeGenomicsToolkit / neutral-model-estimator
  Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit
  ☆11Updated 5 years ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆15Updated 3 years ago
• Bean061 / ptgaul
  chloroplast genome assembly using long reads data
  ☆11Updated last year
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• andreaminio / AnnotationPipeline-EVM_based-DClab
  Cantù Lab @ UC Davis - Annotation pipeline - EVM based
  ☆14Updated 3 months ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆12Updated 10 months ago
• SwallowGenomics / BarnSwallow
  ☆12Updated last year
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• malonge / CallSV
  A long-read SV calling pipeline
  ☆11Updated 3 years ago
• LAILAB-CAU / update-Mo17
  ☆23Updated last year
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆22Updated last year
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆19Updated 6 months ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆20Updated 4 years ago
• LeilyR / Multi-genome-Reference
  A program to generate a graph which presents a simplified representation of several full length genomes
  ☆12Updated 6 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• xhhuanglab / QTN_scripts
  ☆9Updated 4 years ago
• HuffordLab / Maize_NC358
  The repository for codes developed to generated the Maize NC358 assemblies and analyses.
  ☆11Updated 4 years ago
• ChenHuaLab / HaploSweep
  HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
  ☆9Updated 4 months ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 5 years ago
• YingDings / Introgression-Detection-Methods
  ☆11Updated last year
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 7 years ago