Alternatives and similar repositories for GameteBinning

Users that are interested in GameteBinning are comparing it to the libraries listed below

• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆22Updated last month
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆17Updated last year
• glogsdon1 / sunk-based_assembly
  ☆16Updated 4 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• LeilyR / Multi-genome-Reference
  A program to generate a graph which presents a simplified representation of several full length genomes
  ☆13Updated 7 years ago
• andreaminio / AnnotationPipeline-EVM_based-DClab
  Cantù Lab @ UC Davis - Annotation pipeline - EVM based
  ☆14Updated 11 months ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆19Updated 4 months ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• ChenHuaLab / HaploSweep
  HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
  ☆11Updated last year
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 7 months ago
• bwringe / hybriddetective
  ☆14Updated 2 years ago
• quanc1989 / SV-ONT-Tibetan
  Characterization of Structural Variation in Chinese samples
  ☆18Updated 3 years ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆18Updated last year
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 5 years ago
• SamueleSoraggi / HMMploidy
  A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
  ☆18Updated 2 years ago
• Bean061 / ptgaul
  chloroplast genome assembly using long reads data
  ☆13Updated 3 months ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆14Updated last year
• ytwangZero / easyEWAS
  ☆14Updated 3 months ago
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆17Updated 3 years ago
• ComparativeGenomicsToolkit / neutral-model-estimator
  Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit
  ☆11Updated 5 years ago
• alshai / vcf2msa
  convert a multi-sample VCF file to a multiple sequence alignment (C)
  ☆14Updated 6 years ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆17Updated 3 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆26Updated 3 months ago
• wjidea / defusion
  defusion
  ☆14Updated 4 years ago
• zlguu / Rice_Heterosis
  ☆16Updated 2 years ago
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago
• baoxingsong / dCNS
  conserved non-coding sequence
  ☆14Updated 3 years ago