schneebergerlab / GameteBinningLinks
☆12Updated 5 years ago
Alternatives and similar repositories for GameteBinning
Users that are interested in GameteBinning are comparing it to the libraries listed below
Sorting:
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 4 months ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆17Updated last year
- The MafFilter genome alignment processor☆19Updated 2 weeks ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 10 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated 2 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- ☆15Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Long Read Based SV Calling Tools Analysis☆14Updated last year
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- ☆15Updated 2 years ago
- chloroplast genome assembly using long reads data☆13Updated 5 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆29Updated 4 months ago
- repository for code used in analysis of open wild wheat consortium☆18Updated 4 years ago
- ☆13Updated 3 months ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Updated 6 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- ☆16Updated 4 years ago
- The tools are used for displaying hic signal of genome☆24Updated 5 years ago