schneebergerlab / GameteBinning
☆12Updated 4 years ago
Alternatives and similar repositories for GameteBinning:
Users that are interested in GameteBinning are comparing it to the libraries listed below
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 3 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- ☆16Updated 2 years ago
- The MafFilter genome alignment processor☆17Updated 4 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 5 months ago
- parallelLastz: Running Lastz in parallel☆15Updated 4 months ago
- ☆9Updated 3 years ago
- chloroplast genome assembly using long reads data☆11Updated last year
- repository for code used in analysis of open wild wheat consortium☆15Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 6 months ago
- SINE annotation tool for plant genomes☆17Updated 11 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- plot genome alignment synteny☆20Updated 4 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Updated 10 months ago
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- B73Ab10 genome assembly methods☆16Updated 2 years ago
- Genome alignment and synteny plots☆27Updated last year
- ☆14Updated 2 years ago
- ☆16Updated 5 years ago
- Simple tools for working with Hi-C data☆16Updated 6 years ago
- ☆15Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- ☆15Updated 3 years ago
- Yet another Hi-C scaffolding tool☆18Updated 2 months ago
- ☆15Updated last year