schneebergerlab / GameteBinning
☆12Updated 3 years ago
Related projects: ⓘ
- The MafFilter genome alignment processor☆17Updated this week
- Tools for haplotype-wise reconstruction of pseudomolecules☆17Updated 3 weeks ago
- ☆16Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆13Updated last year
- SINE annotation tool for plant genomes☆18Updated 7 months ago
- Scripts to do haplotype analysis on pan genomes.☆20Updated 3 years ago
- parallelLastz: Running Lastz in parallel☆15Updated this week
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆16Updated 2 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Simple tools for working with Hi-C data☆15Updated 5 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆13Updated last year
- B73Ab10 genome assembly methods☆16Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆14Updated 8 months ago
- Genome alignment and synteny plots☆27Updated last year
- ☆18Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆21Updated 2 years ago
- plot genome alignment synteny☆19Updated 4 years ago
- ☆14Updated last year
- repository for code used in analysis of open wild wheat consortium☆15Updated 2 years ago
- chloroplast genome assembly using long reads data☆10Updated last year
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago
- ☆15Updated 3 weeks ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆12Updated 4 months ago
- ☆14Updated 9 months ago