lstevison / vcf-conversion-tools
Tools to convert to and from vcf format
☆14Updated 7 years ago
Alternatives and similar repositories for vcf-conversion-tools:
Users that are interested in vcf-conversion-tools are comparing it to the libraries listed below
- ☆24Updated 7 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated 2 months ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Genome-wide scan for balancing selection using beta statistic☆29Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Software package for estimating fine-scale recombination rate.☆14Updated 3 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Tutorial on using popular tools for learning about population history☆50Updated 6 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆18Updated 5 years ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated last month
- SV calling for diploid assemblies☆26Updated last year
- ☆30Updated 5 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- TGS scaffolding☆46Updated 3 years ago
- General purpose population genetics software☆12Updated 5 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- A tool for evaluate long-read de novo assembly results☆44Updated 7 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆42Updated 11 months ago
- A box of genomics tools☆21Updated 4 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 7 months ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated this week