Tools to convert to and from vcf format
☆14Jun 21, 2017Updated 8 years ago
Alternatives and similar repositories for vcf-conversion-tools
Users that are interested in vcf-conversion-tools are comparing it to the libraries listed below
Sorting:
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- Estimate recombination rates from population genetic data☆71Jun 10, 2020Updated 5 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- ☆11Mar 4, 2025Updated 11 months ago
- A simple C++17 header-only library for generating SVG plots☆10Mar 17, 2024Updated last year
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 4 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- ☆16Aug 25, 2025Updated 6 months ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- the hierfstat package☆25Nov 20, 2024Updated last year
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 8 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆12Apr 16, 2019Updated 6 years ago
- std::map/std::set implementation using the adaptive radix tree☆15Jul 14, 2021Updated 4 years ago
- Detect recombination hotspots using population genetic data.☆17Jun 10, 2020Updated 5 years ago
- ☆18May 10, 2023Updated 2 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- Pinpoints the mutation favored by selection☆34Nov 2, 2021Updated 4 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- ☆16Oct 16, 2017Updated 8 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 7 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆155Oct 27, 2025Updated 4 months ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 9 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 6 months ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago
- Useful bioinformatic scripts☆60Feb 23, 2026Updated last week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Aug 26, 2025Updated 6 months ago
- ☆28Sep 28, 2024Updated last year
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 7 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Apr 1, 2021Updated 4 years ago
- Population genetics analyses from NGS data☆27Mar 8, 2021Updated 4 years ago
- Concise Common Workflow Language☆29Feb 6, 2026Updated 3 weeks ago