viralComplete: BLAST-based viral completeness verification
☆23Oct 4, 2021Updated 5 years ago
Alternatives and similar repositories for viralComplete
Users that are interested in viralComplete are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- viralVerify: viral contig verification tool☆79Feb 19, 2026Updated 8 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- a comparative genome browser for bacteriophages☆21Updated this week
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆30Nov 20, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Binning Virus Genomes from Metagenomes☆78Jul 13, 2022Updated 4 years ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 5 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- ☆20May 13, 2021Updated 5 years ago
- ☆20Nov 17, 2022Updated 3 years ago
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- ☆14Sep 2, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Virus Identification By iteRative ANnoTation☆209Apr 15, 2024Updated 2 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 3 years ago
- viralFlye pipeline☆19Aug 12, 2024Updated 2 years ago
- ☆21Feb 13, 2020Updated 6 years ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- Phage-Host Interaction Search Tool☆33Sep 10, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆24Mar 20, 2026Updated 7 months ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆20Sep 2, 2025Updated last year
- ☆27Jun 20, 2023Updated 3 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆139Apr 9, 2020Updated 6 years ago
- ☆12Apr 21, 2016Updated 10 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆81Sep 20, 2023Updated 3 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆24May 19, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 7 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆56Oct 12, 2023Updated 3 years ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated 2 years ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆112Sep 15, 2026Updated last month
- PHANOTATE: a gene caller for phages.☆94Dec 2, 2024Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year