lmward / MetaPOAPLinks
the Metagenomic test for Presence Or Absence of Pathways
☆13Updated 6 years ago
Alternatives and similar repositories for MetaPOAP
Users that are interested in MetaPOAP are comparing it to the libraries listed below
Sorting:
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 4 months ago
- simple and not slow ORF caller☆21Updated last month
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆17Updated last week
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 7 months ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 11 months ago
- Compute strain abundance in a defined microbial community☆10Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- De novo VIral Genome Annotator☆23Updated last year
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated last month
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 5 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated last month
- blast, shmlast☆21Updated 5 years ago
- map Illumina metagenomes to genomes!☆38Updated this week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Updated 3 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- ☆23Updated 6 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated last year
- Raspir, the rare species identifier☆11Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- ☆16Updated last week