FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of microbiome functional shifts
☆24Jul 3, 2021Updated 4 years ago
Alternatives and similar repositories for fishtaco
Users that are interested in fishtaco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Model-based Integration of Metabolite Observations and Species Abundances☆24Feb 21, 2020Updated 6 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆16Nov 7, 2019Updated 6 years ago
- A visualization tool for exploratory data analysis of metagenomic data☆39Mar 22, 2022Updated 4 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated last month
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Mar 31, 2022Updated 3 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 12 years ago
- ☆11Dec 28, 2019Updated 6 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Dec 27, 2018Updated 7 years ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- ☆20Jul 22, 2024Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- ☆12Apr 6, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- python stuff I use☆20Feb 16, 2026Updated last month
- A very simple BLAST filtering pipeline☆19Mar 28, 2014Updated 11 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- metag-rev-sup☆22Jun 21, 2017Updated 8 years ago
- Parallel/Homoplasic SNP Finder☆21May 3, 2023Updated 2 years ago
- simple and not slow ORF caller☆22Nov 6, 2025Updated 4 months ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Phylogenetic plots for R and ggplot☆27Oct 3, 2012Updated 13 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 6 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 6 months ago
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 9 years ago
- Protein Alignment and Detection Interface☆60Apr 1, 2024Updated last year
- Fast expectation maximization for microbial source tracking☆142May 9, 2024Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Aug 24, 2022Updated 3 years ago
- ☆18Feb 19, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- shotgun pipeline☆12Apr 3, 2019Updated 6 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆17Nov 23, 2020Updated 5 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 4 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Nov 24, 2025Updated 4 months ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆132Oct 6, 2023Updated 2 years ago
- ☆12May 11, 2016Updated 9 years ago
- Zero-Inflated Beta Random Effect model☆31Mar 6, 2026Updated 2 weeks ago