hangelwen / metaCRISPRLinks
☆12Updated 9 years ago
Alternatives and similar repositories for metaCRISPR
Users that are interested in metaCRISPR are comparing it to the libraries listed below
Sorting:
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- ☆20Updated 9 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Updated 8 years ago
- StrainFinder☆29Updated 7 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆15Updated 5 years ago
- ☆41Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Making Metagenomes Manageable☆12Updated 8 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Updated this week
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆58Updated 3 weeks ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- ☆53Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Updated 4 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- visualising sequence similarity with Circos☆41Updated 6 years ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆45Updated last year
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago