☆77Mar 10, 2024Updated 2 years ago
Alternatives and similar repositories for COMEBin
Users that are interested in COMEBin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SemiBin: metagenomics binning with self-supervised deep learning☆162Apr 25, 2026Updated 3 weeks ago
- ☆64Feb 27, 2024Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated last month
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Jun 3, 2025Updated 11 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Updated this week
- Variational autoencoder for metagenomic binning☆327Apr 27, 2026Updated 3 weeks ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆91May 11, 2026Updated last week
- An algorithm for clustering metagenomic sequences.☆42Dec 12, 2025Updated 5 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆263Mar 20, 2025Updated last year
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated last month
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated last year
- ☆14Sep 2, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆303Feb 3, 2026Updated 3 months ago
- Read alignment statistics for metagenomics☆397Apr 8, 2026Updated last month
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆250May 13, 2026Updated last week
- DAS Tool☆173May 2, 2024Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆45Feb 17, 2023Updated 3 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- ☆36Nov 20, 2023Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆215May 9, 2026Updated 2 weeks ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆27Nov 2, 2025Updated 6 months ago
- ☆26Jun 20, 2023Updated 2 years ago
- tiara – a tool for DNA sequence classification☆83Mar 2, 2024Updated 2 years ago
- Bioinformatics program inStrain☆186Mar 12, 2026Updated 2 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated 2 weeks ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 4 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- ☆18Nov 7, 2025Updated 6 months ago
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 4 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 9 months ago
- FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code☆13Mar 6, 2018Updated 8 years ago