rcedgar / palmdbLinks
Database of virus RdRP barcode sequences
☆16Updated last year
Alternatives and similar repositories for palmdb
Users that are interested in palmdb are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 months ago
- Reference-guided multiple sequence alignment of viral genomes☆71Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆28Updated last month
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 2 years ago
- Python bindings for the TaxonKit library☆41Updated 2 months ago
- A package to annotate protein sequences☆60Updated 6 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 8 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 9 months ago
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- ☆26Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- ☆51Updated 3 months ago
- ☆16Updated 3 weeks ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆35Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆32Updated 7 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆36Updated last week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆51Updated 6 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Metagenome analysis using the Kraken software suite☆33Updated 2 years ago
- Convert genbank files to a swath of other formats☆18Updated last year
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated 3 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated last year
- Discover and annotate the virome☆49Updated this week