rcedgar / palmdb
Database of virus RdRP barcode sequences
☆15Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for palmdb
- ☆25Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆29Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 2 years ago
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- Convert genbank files to a swath of other formats☆14Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 6 months ago
- Detection of incorrectly labeled sequences across kingdoms☆79Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 7 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆47Updated 5 months ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 months ago
- ☆35Updated this week
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆32Updated 2 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- KBase distribution module for RASTtk.☆13Updated 4 years ago
- Find Unique genomic Regions☆29Updated this week
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆24Updated 3 months ago
- ☆25Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆19Updated last year
- Python bindings for the TaxonKit library☆31Updated 3 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆37Updated 2 months ago
- ☆23Updated 8 months ago
- PaperBLAST: find papers about a protein or its homologs☆35Updated this week
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- Strain Resolution ON Graphs☆46Updated last year
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆20Updated 4 months ago