Database of virus RdRP barcode sequences
☆16Jul 5, 2024Updated last year
Alternatives and similar repositories for palmdb
Users that are interested in palmdb are comparing it to the libraries listed below
Sorting:
- ☆26Jun 26, 2025Updated 8 months ago
- R Data Exploration for Serratus☆15Mar 29, 2023Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- ☆17May 26, 2022Updated 3 years ago
- ☆35Jun 26, 2025Updated 8 months ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Jul 28, 2018Updated 7 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Latest MOCAT2 version☆18Mar 8, 2021Updated 4 years ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Jul 23, 2025Updated 7 months ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆11Jul 4, 2025Updated 8 months ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆114Updated this week
- RNA dependent RNA Polymerase Palmprint Analysis☆12Aug 1, 2024Updated last year
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated 7 months ago
- Ultra-deep search for novel viruses☆275Mar 29, 2023Updated 2 years ago
- a comparative genome browser for bacteriophages☆20Jan 17, 2025Updated last year
- ☆16Feb 23, 2026Updated last week
- ☆34Oct 6, 2025Updated 4 months ago
- An open database of vertebrate-virus interactions☆40Dec 16, 2025Updated 2 months ago
- Exploring the "dusk matter" of the RNA virosphere☆37Mar 25, 2022Updated 3 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- viral-ngs: complete pipelines☆73Updated this week
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆106Feb 15, 2024Updated 2 years ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆16Aug 3, 2021Updated 4 years ago
- Phylogenetic tree library for JavaScript/Node.js☆38Nov 16, 2022Updated 3 years ago
- ☆17Sep 20, 2019Updated 6 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Feb 18, 2026Updated 2 weeks ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated 2 weeks ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 3 years ago
- Robust Open Reading Frame prediction (ANGLE re-implementation)☆16Aug 2, 2021Updated 4 years ago
- Conditional Auto-Regressive LASSO in R☆20Nov 11, 2022Updated 3 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Jan 5, 2022Updated 4 years ago
- ☆21Nov 17, 2022Updated 3 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- ☆23May 13, 2024Updated last year