zjshi / snv_analysis_almeida2019
☆22Updated 5 years ago
Alternatives and similar repositories for snv_analysis_almeida2019
Users that are interested in snv_analysis_almeida2019 are comparing it to the libraries listed below
Sorting:
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear …☆28Updated 3 months ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- ☆32Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Code for running the analysis in our universe of genes project☆8Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 2 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated 2 years ago
- viralComplete: BLAST-based viral completeness verification☆25Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆40Updated 5 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 3 months ago
- ☆20Updated 8 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆15Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated last month