☆21Feb 13, 2020Updated 6 years ago
Alternatives and similar repositories for snv_analysis_almeida2019
Users that are interested in snv_analysis_almeida2019 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MGnify genome analysis pipeline☆114Oct 28, 2026Updated last week
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- ☆23May 8, 2023Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆26May 18, 2024Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Apr 18, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Metagenomics Taxonomic Reads Assembly Single-Species☆16May 25, 2023Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Feb 3, 2023Updated 3 years ago
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 5 years ago
- Examples on how to use the karyoploteR R/Bioconductor package☆12Feb 3, 2023Updated 3 years ago
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆29Jul 21, 2022Updated 4 years ago
- A 'time'-like utility for Unix that measures peak memory usage☆18Jun 5, 2024Updated 2 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- Software for processing molecular barcoding (UMI)-based NGS data☆10May 22, 2020Updated 6 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Supporting code for uncultivated gut virus manuscript☆81Jul 17, 2023Updated 3 years ago
- Design primers for species-specific qPCR☆10Jun 1, 2017Updated 9 years ago
- Long-read metagenomic analysis☆113Oct 10, 2023Updated 3 years ago
- Visualize next generation sequencing reads over putative structural variants☆13Aug 25, 2014Updated 12 years ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 4 months ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆134Oct 6, 2023Updated 3 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆35Aug 16, 2022Updated 4 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Set of utilities on sequences and BAM files☆28Oct 27, 2021Updated 5 years ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Oct 3, 2023Updated 3 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆41Sep 28, 2022Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- ☆29Jan 16, 2024Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆76Dec 28, 2019Updated 6 years ago
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 7 years ago
- ☆32Jun 12, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆20Mar 29, 2022Updated 4 years ago
- ☆13Jul 27, 2026Updated 3 months ago
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 6 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 3 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆17Dec 20, 2024Updated last year