zjshi / snv_analysis_almeida2019Links
☆22Updated 5 years ago
Alternatives and similar repositories for snv_analysis_almeida2019
Users that are interested in snv_analysis_almeida2019 are comparing it to the libraries listed below
Sorting:
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 6 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated 2 years ago
- Code for running the analysis in our universe of genes project☆8Updated 6 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- ☆11Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆41Updated 5 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 2 years ago
- ☆16Updated 2 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated 11 months ago
- ☆22Updated this week
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 6 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- ☆56Updated last year
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆41Updated 5 years ago
- ☆32Updated 2 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 2 weeks ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆11Updated 3 years ago