zjshi / snv_analysis_almeida2019Links
☆21Updated 5 years ago
Alternatives and similar repositories for snv_analysis_almeida2019
Users that are interested in snv_analysis_almeida2019 are comparing it to the libraries listed below
Sorting:
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆24Updated 2 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated this week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 7 months ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆31Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Draw pan- and core-genome curves from proteinortho output☆10Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 6 months ago
- ☆32Updated 8 months ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 6 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- R package to predict microbial loads☆16Updated 3 months ago
- Detection of NCLDV signatures in 'omic data☆34Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 months ago
- Pangenome analysis of eukaryotes.☆19Updated 4 years ago