andreas-wilm / lofreq3Links
LoFreq Version 3
☆27Updated 4 years ago
Alternatives and similar repositories for lofreq3
Users that are interested in lofreq3 are comparing it to the libraries listed below
Sorting:
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Code for nanopore paper☆33Updated 10 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Detect novel (and reference) STR expansions from short-read data☆70Updated 3 weeks ago
- CRyPTIC data processing pipelines☆34Updated last year
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated 3 weeks ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Genome Annotation Without Nightmares☆46Updated 11 months ago