andreas-wilm / lofreq3Links
LoFreq Version 3
☆27Updated 4 years ago
Alternatives and similar repositories for lofreq3
Users that are interested in lofreq3 are comparing it to the libraries listed below
Sorting:
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Detect novel (and reference) STR expansions from short-read data☆70Updated 2 months ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Updated 5 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Code for nanopore paper☆33Updated 10 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- A reference viral database (RVDB)☆26Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Updated 7 years ago
- Benchmark datasets for WGS analysis☆39Updated 6 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago