andreas-wilm / lofreq3
LoFreq Version 3
☆27Updated 3 years ago
Alternatives and similar repositories for lofreq3:
Users that are interested in lofreq3 are comparing it to the libraries listed below
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- ☆26Updated 4 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆50Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Find Unique genomic Regions☆29Updated last month
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Structural variant caller☆54Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆12Updated 8 months ago
- Adapters for trimming☆30Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 5 months ago
- Generate unique KMERs for every contig in a FASTA file☆47Updated 2 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Maximum likelihood demultiplexing☆46Updated last week
- Code for nanopore paper☆33Updated 9 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 4 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆52Updated 3 months ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago