JLSteenwyk / BioKITLinks
a versatile toolkit for processing and analyzing diverse types of sequence data
☆21Updated 8 months ago
Alternatives and similar repositories for BioKIT
Users that are interested in BioKIT are comparing it to the libraries listed below
Sorting:
- transposable element typing pipeline☆19Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- finding conserved regions in highly diverse genomes☆15Updated 3 months ago
- Find Unique genomic Regions☆30Updated this week
- Nanopore Real-Time Analysis Tool☆15Updated 11 months ago
- ☆17Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- Influenza genome analysis Nextflow workflow☆22Updated last month
- Read contamination removal☆25Updated last year
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Implementation of ToL genome assembly workflows☆20Updated last week
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Reference genome quality scores☆21Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆20Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Variant call verification☆16Updated 3 months ago
- Convert genbank files to a swath of other formats☆18Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- ☆14Updated last year
- De novo VIral Genome Annotator☆23Updated 11 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆12Updated 3 years ago
- ☆10Updated 3 months ago