Alternatives and similar repositories for BioKIT:

Users that are interested in BioKIT are comparing it to the libraries listed below

• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 2 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆17Updated 10 months ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 8 years ago
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆30Updated last month
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆22Updated 3 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆19Updated last week
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated last year
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆22Updated 9 months ago
• rrwick / Small-plasmid-Nanopore
  ☆11Updated 3 years ago
• nf-core / genomeassembler
  ☆16Updated this week
• laxeye / zga
  ZGA prokaryotic genome assembly and annotation pipeline
  ☆12Updated 4 months ago
• LuoGroup2023 / PanTax
  Strain-level taxonomic classification of metagenomic data using pangenome graphs
  ☆22Updated 2 months ago
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated 10 months ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆19Updated last year
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 3 weeks ago
• deng-lab / viroprofiler
  A containerized bioinformatics pipeline for viral metagenomic data analysis
  ☆27Updated 5 months ago
• fab-araujo / gofeat
  GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
  ☆17Updated 9 months ago
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
  ☆20Updated last year
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆21Updated 2 years ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆25Updated last month
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆27Updated last month
• Xiangyang1984 / Gcluster
  A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes
  ☆15Updated 7 months ago
• rrwick / Compare-annotations
  A script for comparing old vs new versions of genome annotations
  ☆20Updated last year
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 6 years ago
• karubiotools / getSequenceInfo
  A Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
  ☆12Updated last month
• theiagen / public_health_bacterial_genomics
  ☆27Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago