JLSteenwyk / BioKITLinks
a versatile toolkit for processing and analyzing diverse types of sequence data
☆22Updated last year
Alternatives and similar repositories for BioKIT
Users that are interested in BioKIT are comparing it to the libraries listed below
Sorting:
- Nanopore Real-Time Analysis Tool☆16Updated last year
- transposable element typing pipeline☆19Updated last year
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- finding conserved regions in highly diverse genomes☆15Updated 7 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 7 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- Implementation of ToL genome assembly workflows☆24Updated 3 weeks ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Updated last month
- ☆43Updated last year
- Code for detecting genomic island insertions in clades of microbes.☆19Updated 2 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Convert genbank files to a swath of other formats☆24Updated this week
- Influenza genome analysis Nextflow workflow☆24Updated this week
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 8 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 4 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 5 years ago
- Read contamination removal☆25Updated last year
- ☆10Updated 3 weeks ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated last month
- Variant call verification☆16Updated 7 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated this week
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated 8 months ago