BenLangmead / bowtie2
A fast and sensitive gapped read aligner
☆683Updated this week
Related projects ⓘ
Alternatives and complementary repositories for bowtie2
- De novo assembler for single molecule sequencing reads using repeat graphs☆789Updated 2 months ago
- The next version of bwa-mem☆722Updated 3 months ago
- The second version of the Kraken taxonomic sequence classification system☆731Updated this week
- A single molecule sequence assembler for genomes large and small.☆660Updated this week
- A quality control analysis tool for high throughput sequencing data☆450Updated 10 months ago
- Phylogenetic orthology inference for comparative genomics☆708Updated 3 weeks ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆789Updated 5 months ago
- Fast genome-wide functional annotation through orthology assignment☆572Updated 6 months ago
- bedtools - the swiss army knife for genome arithmetic☆939Updated 4 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆587Updated last year
- Transcript assembly and quantification for RNA-Seq☆384Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,395Updated 3 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆680Updated this week
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆421Updated 8 months ago
- SPAdes Genome Assembler☆762Updated 2 weeks ago
- MACS -- Model-based Analysis of ChIP-Seq☆713Updated last week
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆472Updated last month
- Structural variation caller using third generation sequencing☆561Updated this week
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆777Updated 5 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆478Updated this week
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,631Updated this week
- Mummer alignment tool☆466Updated this week
- Near-optimal RNA-Seq quantification☆657Updated last week
- Rapid prokaryotic genome annotation☆846Updated 7 months ago
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆655Updated 2 weeks ago
- Trinity RNA-Seq de novo transcriptome assembly☆837Updated 3 months ago
- Haplotype VCF comparison tools☆420Updated 11 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆760Updated last week
- Bioinformatics code libraries and scripts☆503Updated last month