abishara / athena_metaLinks
read cloud assembler
☆36Updated 6 years ago
Alternatives and similar repositories for athena_meta
Users that are interested in athena_meta are comparing it to the libraries listed below
Sorting:
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- A gene-targeted assembler tool☆19Updated 7 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated this week
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆25Updated 3 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆60Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Updated last year
- Dot: An interactive dot plot viewer for comparative genomics☆7Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- ☆31Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- UCSC Nanopore☆43Updated 6 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆26Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago