abishara / athena_metaLinks
read cloud assembler
☆35Updated 6 years ago
Alternatives and similar repositories for athena_meta
Users that are interested in athena_meta are comparing it to the libraries listed below
Sorting:
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- A gene-targeted assembler tool☆19Updated 7 years ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- ☆31Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 3 weeks ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- UCSC Nanopore☆43Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- ☆49Updated 11 months ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- ☆26Updated 5 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago