read cloud assembler
☆35Apr 3, 2019Updated 6 years ago
Alternatives and similar repositories for athena_meta
Users that are interested in athena_meta are comparing it to the libraries listed below
Sorting:
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 6 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆99Jul 3, 2024Updated last year
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 7 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- ☆17May 10, 2022Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Jun 5, 2018Updated 7 years ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Aug 13, 2025Updated 7 months ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆52May 16, 2022Updated 3 years ago
- De novo genome assembly and multisample variant calling☆112Mar 28, 2019Updated 6 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- hybrid assembly pipeline for bacterial genomes☆634Jul 25, 2024Updated last year
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 9 months ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 2 years ago
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Apr 10, 2019Updated 6 years ago
- Ruby library for handling GFA files☆17Jul 10, 2025Updated 8 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆296May 9, 2024Updated last year
- a Sequencing Quality Assessment Tool☆17Jul 28, 2022Updated 3 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- ☆15Aug 6, 2020Updated 5 years ago
- just annotate it, dammit!☆93Aug 22, 2023Updated 2 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago