OPERA-MS - Hybrid Metagenomic Assembler
☆102Jul 3, 2024Updated last year
Alternatives and similar repositories for OPERA-MS
Users that are interested in OPERA-MS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Aug 10, 2021Updated 4 years ago
- Variational autoencoder for metagenomic binning☆327Apr 27, 2026Updated 3 weeks ago
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated last month
- read cloud assembler☆35Apr 3, 2019Updated 7 years ago
- hybrid assembly pipeline for bacterial genomes☆641Jul 25, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆303Feb 3, 2026Updated 3 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆470Jul 28, 2023Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆302Apr 25, 2025Updated last year
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- Clustering cONtigs with COverage and ComposiTion☆138Mar 6, 2020Updated 6 years ago
- Long-read metagenomic analysis☆111Oct 10, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- De novo assembler for single molecule sequencing reads using repeat graphs☆930Apr 3, 2026Updated last month
- ☆64Feb 27, 2024Updated 2 years ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 2 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learning☆162Apr 25, 2026Updated 3 weeks ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆598May 8, 2026Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆408Mar 2, 2026Updated 2 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43May 4, 2026Updated 2 weeks ago
- Bioinformatics program inStrain☆186Mar 12, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 6 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆81Jun 17, 2024Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆415May 3, 2026Updated 2 weeks ago
- Mining CRISPRs in Environmental Datasets☆124Feb 10, 2023Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 8 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated 10 months ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The second version of the Kraken taxonomic sequence classification system☆900May 8, 2026Updated last week
- Long-read mock community experiments☆104Oct 8, 2021Updated 4 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆215May 9, 2026Updated last week
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Classifier for metagenomic sequences☆274Apr 15, 2026Updated last month
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated 2 weeks ago