CSB5 / OPERA-MSLinks
OPERA-MS - Hybrid Metagenomic Assembler
☆95Updated last year
Alternatives and similar repositories for OPERA-MS
Users that are interested in OPERA-MS are comparing it to the libraries listed below
Sorting:
- Long-read mock community experiments☆106Updated 3 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated last year
- Development version of Easyfig☆99Updated last year
- Foreign Contamination Screening caller scripts and documentation☆133Updated 4 months ago
- DDBJ Fast Annotation and Submission Tool☆81Updated 3 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆160Updated this week
- A toolbox for comparative genomics.☆104Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆135Updated 2 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆151Updated last month
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 3 months ago
- Get assembly statistics from FASTA and FASTQ files☆121Updated 2 years ago
- ☆83Updated last year
- Clustering cONtigs with COverage and ComposiTion☆132Updated 5 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆168Updated this week
- ☆78Updated 4 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆167Updated last month
- Nanopore data assembler☆158Updated 3 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆81Updated 3 weeks ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 2 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 9 months ago
- Constructing a pangenome gene graph☆193Updated 2 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated 2 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆61Updated 2 years ago
- Interactive quality assessment of genome assemblies☆104Updated 3 months ago
- snipit: summarise snps relative to your reference sequence☆163Updated 2 months ago