kstatebioinfo / Irys-scaffolding
scripts to parse IrysView output
☆11Updated 9 years ago
Alternatives and similar repositories for Irys-scaffolding:
Users that are interested in Irys-scaffolding are comparing it to the libraries listed below
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- ☆21Updated 5 years ago
- Tool for visualising assemblies.☆17Updated 9 years ago
- genomic alignment similarity search tool☆19Updated 8 months ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆30Updated 5 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- ☆29Updated 2 years ago
- Haploidy and Size Completeness Estimation☆13Updated 10 months ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Visualising discordant reads☆15Updated 9 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Identifying repeats in high-throughput sequencing data☆15Updated 10 months ago