Alternatives and similar repositories for Irys-scaffolding:

Users that are interested in Irys-scaffolding are comparing it to the libraries listed below

• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 4 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• wen-biao / OM-HiC-scaffolding
  Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
  ☆20Updated 4 years ago
• laurentnoe / yass
  genomic alignment similarity search tool
  ☆18Updated 10 months ago
• mjsull / DiscoPlot
  Visualising discordant reads
  ☆15Updated 9 years ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆19Updated 4 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• AntoineHo / HapPy
  Haploidy and Size Completeness Estimation
  ☆13Updated 11 months ago
• institut-de-genomique / NaS
  NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…
  ☆15Updated 8 years ago
• brwnj / idplot
  compare sequences to a shared root reference sequence.
  ☆24Updated 3 years ago
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆13Updated 8 years ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆30Updated 3 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 4 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 11 months ago
• md5sam / Falcon2Fastg
  Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage
  ☆13Updated 8 years ago
• kakitone / MetaFinisherSC
  This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…
  ☆13Updated 9 years ago
• lpryszcz / pyScaf
  Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
  ☆24Updated 6 years ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆15Updated 11 months ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• usnistgov / pepr
  Pipeline for Evaluating Prokaryotic References
  ☆11Updated 8 years ago
• mjsull / Contiguity
  Tool for visualising assemblies.
  ☆17Updated 9 years ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 4 years ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• mpdunne / orthofiller
  OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
  ☆22Updated 2 years ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 6 months ago
• uio-bmi / two_step_graph_mapper
  ☆21Updated 5 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆48Updated 5 years ago
• jfarek / xatlas
  ☆29Updated 2 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago