lh3 / gfa1Links
This repo is deprecated. Please use gfatools instead.
☆16Updated 6 years ago
Alternatives and similar repositories for gfa1
Users that are interested in gfa1 are comparing it to the libraries listed below
Sorting:
- ☆28Updated 3 months ago
- ☆25Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- ☆15Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- ☆16Updated 7 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 9 months ago
- ☆16Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- Pan-genome Seed Index☆20Updated 4 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- ☆15Updated 7 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆35Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago