lh3 / gfa1Links
This repo is deprecated. Please use gfatools instead.
☆16Updated 6 years ago
Alternatives and similar repositories for gfa1
Users that are interested in gfa1 are comparing it to the libraries listed below
Sorting:
- ☆15Updated 4 years ago
- ☆28Updated last month
- ☆25Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆12Updated last month
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- ☆16Updated 7 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- ☆16Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆15Updated 7 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- ☆14Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago