mreppell / Karp
Accurate and fast taxonomic classification using pseudoaligning
☆21Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for Karp
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆13Updated last month
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- ☆14Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Mapping-free variant caller for short-read Illumina data☆18Updated 4 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Highly sensitive pathogen detection☆11Updated 4 years ago
- ☆19Updated 7 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- ☆16Updated 6 years ago
- Indel-aware consensus from aligned BAMs☆20Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- fastq quality assessment and filtering tool☆18Updated last year
- ☆11Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Northern Arizona SNP Pipeline☆19Updated 3 weeks ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 4 years ago
- Variant call adjudication☆16Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆14Updated 5 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago