Alternatives and similar repositories for Karp:

Users that are interested in Karp are comparing it to the libraries listed below

• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆23Updated last year
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated 10 months ago
• nickloman / poredb
  ☆19Updated 8 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 weeks ago
• Grice-Lab / AlignerBoost
  AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …
  ☆11Updated 3 years ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 10 months ago
• xa6xa6 / metaOthello
  ☆16Updated 6 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 7 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 5 months ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• paudano / kestrel
  Mapping-free variant caller for short-read Illumina data
  ☆19Updated 5 years ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆14Updated 6 months ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• xmuyulab / Snipe
  Highly sensitive pathogen detection
  ☆12Updated 4 years ago
• camillescott / shmlast
  blast, shmlast
  ☆22Updated 4 years ago
• SilvioWeging / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• alexiswl / poreduck
  A comprehensive toolkit for running Oxford Nanopore's MinION
  ☆12Updated 6 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• ncbi-gpipe / pgap
  (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:
  ☆16Updated 6 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• cvdelannoy / poreTally
  Benchmark MinION assembler pipelines and publish your results in a heartbeat!
  ☆15Updated 5 years ago
• KiddLab / QuicK-mer2
  ☆11Updated 2 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆17Updated last year
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• hallamlab / LCAStar
  Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
  ☆16Updated 10 months ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago