gt1 / daccordLinks
d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly
☆19Updated 7 years ago
Alternatives and similar repositories for daccord
Users that are interested in daccord are comparing it to the libraries listed below
Sorting:
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- ☆34Updated 5 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated last month
- ☆21Updated 5 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated 11 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated last month
- Population-wide Deletion Calling☆35Updated 6 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- ☆28Updated 6 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆36Updated 11 months ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 7 years ago
- Graph based multi genome aligner☆48Updated 4 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆36Updated 5 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago