gt1 / daccord
d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly
☆19Updated 6 years ago
Alternatives and similar repositories for daccord:
Users that are interested in daccord are comparing it to the libraries listed below
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- ☆34Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 5 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- ☆21Updated 5 years ago
- Transcript assembly and quantification for RNA-Seq☆8Updated 5 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 5 months ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last week
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆29Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 4 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 months ago
- Scaffolding with RNA-seq read alignment☆20Updated 6 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago