gt1 / daccordLinks
d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly
☆19Updated 6 years ago
Alternatives and similar repositories for daccord
Users that are interested in daccord are comparing it to the libraries listed below
Sorting:
- ☆28Updated 4 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- de Bruijn Graph-based read aligner☆33Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- ☆34Updated 5 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 5 months ago
- A graph aligner☆28Updated 11 months ago
- ☆21Updated 5 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- ☆31Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated this week
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- ☆32Updated 2 years ago
- Python bindings to minimap2☆16Updated 7 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- ☆23Updated 3 months ago