gt1 / daccordLinks
d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly
☆19Updated 7 years ago
Alternatives and similar repositories for daccord
Users that are interested in daccord are comparing it to the libraries listed below
Sorting:
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- ☆35Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆32Updated last month
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- ☆21Updated 6 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- ☆28Updated 7 months ago
- ☆31Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 3 months ago
- ☆23Updated 6 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- Archived version 1.0.2☆16Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆36Updated 3 years ago