Alternatives and similar repositories for lrscaf

Users that are interested in lrscaf are comparing it to the libraries listed below

• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆55Updated 8 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆40Updated 7 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated 2 months ago
• shilpagarg / DipAsm
  ☆78Updated 5 years ago
• kakitone / finishingTool
  finshingTool
  ☆54Updated 9 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 3 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆28Updated 4 years ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 2 months ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated 2 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆58Updated 6 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆55Updated 6 months ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 9 months ago
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 3 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆42Updated last year
• Maggi-Chen / Inspector
  A tool for evaluating long-read de novo assembly results
  ☆52Updated last year
• baozg / phased-assembly-check
  ☆32Updated last year
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆43Updated last year
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆38Updated 4 months ago
• schneebergerlab / fixchr
  ☆21Updated last year
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆68Updated 4 years ago
• kjenike / panagram
  ☆68Updated last week
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆34Updated 7 years ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆73Updated 11 months ago