shingocat / lrscaf
TGS scaffolding
☆46Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for lrscaf
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆43Updated 7 years ago
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- A tool for evaluate long-read de novo assembly results☆42Updated 2 months ago
- ☆77Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆37Updated 4 years ago
- ☆28Updated 2 months ago
- ☆72Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- finshingTool☆54Updated 8 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆38Updated 3 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆43Updated 9 months ago
- Genome Annotation Pipeline☆32Updated 3 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆51Updated last year
- Show pangenome graphs in an easy way☆53Updated 2 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆64Updated last month
- Identification of transposable element families from pangenome polymorphisms☆39Updated 3 months ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated last week
- A organelle de novo genome assembly toolkit☆45Updated 3 weeks ago
- A program to call variants from genome alignment☆76Updated 8 months ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- Splitting of sequence reads by internal adapter sequence search☆52Updated last year
- A shiny application to visualize MCscan result☆33Updated 2 years ago