shingocat / lrscaf
TGS scaffolding
☆46Updated 3 years ago
Alternatives and similar repositories for lrscaf:
Users that are interested in lrscaf are comparing it to the libraries listed below
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- ☆43Updated 8 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆38Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- ☆76Updated 4 years ago
- finshingTool☆55Updated 8 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 3 months ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- ☆76Updated 4 months ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆46Updated last year
- ☆29Updated last month
- Genome Annotation Pipeline☆35Updated 6 months ago
- A program to call variants from genome alignment☆78Updated 11 months ago
- Identification of transposable element families from pangenome polymorphisms☆44Updated 6 months ago
- assembly evaluation tool☆34Updated 2 years ago
- ☆34Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- A tool for evaluate long-read de novo assembly results☆43Updated 5 months ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- ☆32Updated 4 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆73Updated 2 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 2 years ago