Alternatives and similar repositories for wtdbg:

Users that are interested in wtdbg are comparing it to the libraries listed below

• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• gsneha26 / SegAlign
  A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
  ☆71Updated 9 months ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆45Updated 2 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 11 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 2 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• ocxtal / libgaba
  Adaptive semi-global banded alignment on string graphs
  ☆66Updated 7 years ago
• kakitone / finishingTool
  finshingTool
  ☆55Updated 8 years ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆79Updated 2 weeks ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• kjenike / panagram
  ☆61Updated last month
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆39Updated 4 years ago
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆63Updated 10 months ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆7Updated 3 months ago
• VGP / vgp-tools
  ☆28Updated last month
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆67Updated 2 years ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• bwa-mem2 / mm2-fast
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆53Updated 11 months ago
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆30Updated 4 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• HKU-BAL / MegaGTA
  HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
  ☆17Updated 8 years ago
• sandialabs / RUBRIC
  ☆12Updated 6 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year