Alternatives and similar repositories for wtdbg:

Users that are interested in wtdbg are comparing it to the libraries listed below

• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆45Updated last year
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆28Updated last year
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 10 months ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆66Updated 2 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated 11 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated 3 weeks ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 2 months ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• koszullab / instaGRAAL
  Large genome reassembly based on Hi-C data, continuation of GRAAL
  ☆40Updated last year
• kakitone / finishingTool
  finshingTool
  ☆55Updated 8 years ago
• VGP / vgp-tools
  ☆28Updated last year
• gsneha26 / SegAlign
  A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
  ☆68Updated 7 months ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 2 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆100Updated 3 years ago
• ndierckx / Sim-it
  Versatile simulator for structural variance and Nanopore/PacBio sequencing reads
  ☆25Updated last year
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆50Updated 4 years ago
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆20Updated 6 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆34Updated 4 months ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆43Updated 2 years ago
• ablab / VerityMap
  ☆34Updated 2 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆56Updated 2 years ago