marbl / MetaCompassLinks
MetaCompass: Reference-guided Assembly of Metagenomes
☆39Updated 2 weeks ago
Alternatives and similar repositories for MetaCompass
Users that are interested in MetaCompass are comparing it to the libraries listed below
Sorting:
- Gene-flank analysis tool☆28Updated 6 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Assessing and Improving the quality of metagenomic assemblies☆29Updated 3 years ago
- Graph-based assembly phasing☆85Updated 2 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Strain Resolution ON Graphs☆48Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 5 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- Recombination-free trees☆58Updated 3 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆41Updated 4 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Microbial agile accurate SNP Typer☆30Updated last year
- whole genome MLST analysis☆45Updated last month