MetaCompass: Reference-guided Assembly of Metagenomes
☆43Aug 13, 2025Updated 7 months ago
Alternatives and similar repositories for MetaCompass
Users that are interested in MetaCompass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaCarvel: A scaffolder for metagenomes☆14Sep 17, 2024Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Visualization tool for (meta)genome assembly graphs☆46Updated this week
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated 2 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- ☆12Oct 17, 2017Updated 8 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Sep 7, 2019Updated 6 years ago
- Long-read mock community experiments☆104Oct 8, 2021Updated 4 years ago
- ☆32Jun 12, 2023Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 2 months ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Nov 3, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Dec 30, 2019Updated 6 years ago
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 2 months ago
- Tool for visualising assemblies.☆17Sep 15, 2015Updated 10 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Mar 31, 2026Updated last week
- read cloud assembler☆35Apr 3, 2019Updated 7 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆209Nov 18, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- OPERA-MS - Hybrid Metagenomic Assembler☆101Jul 3, 2024Updated last year
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Oct 17, 2018Updated 7 years ago
- Improvement of metagenome-assembled genomes☆55Mar 17, 2020Updated 6 years ago
- ☆42Feb 14, 2021Updated 5 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 8 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Aug 30, 2016Updated 9 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- MIcrobiomes using Compressive Acceleration☆17Feb 10, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆244Jan 18, 2024Updated 2 years ago
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 4 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆15Mar 7, 2019Updated 7 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- Calculate assocations between genes and traits☆30Mar 10, 2025Updated last year
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆18Feb 3, 2026Updated 2 months ago