elimoss / metagenomics_workflowsLinks
Workflows for metagenomic sequence data processing and analysis.
☆17Updated 6 years ago
Alternatives and similar repositories for metagenomics_workflows
Users that are interested in metagenomics_workflows are comparing it to the libraries listed below
Sorting:
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- ☆22Updated 5 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Quality control plotting for long reads☆10Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆41Updated 5 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- ☆53Updated 4 years ago
- de.NBI Nanopore Training Course☆20Updated last month
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- ☆32Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆41Updated 5 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆24Updated last month
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 7 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Genome-Genome circle synteny☆25Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month