HingeAssembler / HINGELinks
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
☆64Updated 4 years ago
Alternatives and similar repositories for HINGE
Users that are interested in HINGE are comparing it to the libraries listed below
Sorting:
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 4 months ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- A repository for generating strobemers and evalaution☆78Updated last year
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆65Updated 4 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 3 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆67Updated 8 months ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Substring index for paths in a graph☆60Updated 2 months ago
- ✏️ Genome assembly polishing & SNV detection☆69Updated 2 weeks ago
- REINDEER REad Index for abuNDancE quERy☆58Updated last week
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆82Updated last week
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago