HingeAssembler / HINGELinks
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
☆63Updated 5 years ago
Alternatives and similar repositories for HINGE
Users that are interested in HINGE are comparing it to the libraries listed below
Sorting:
- Graph-based mapping of long sequences, noisy or HiFi.☆55Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- ✏️ Genome assembly polishing & SNV detection☆71Updated 3 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- ☆35Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Specifications for PacBio® native file formats☆31Updated last year
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- ☆46Updated 5 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Yet Another Chimeric Read Detector☆84Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Updated 6 years ago
- Substring index for paths in a graph☆60Updated last week
- Genome inference from a population reference graph☆96Updated 9 months ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Updated 2 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Hitting associations with k-mers☆44Updated 3 years ago