HingeAssembler / HINGELinks
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
☆63Updated 5 years ago
Alternatives and similar repositories for HINGE
Users that are interested in HINGE are comparing it to the libraries listed below
Sorting:
- Graph-based mapping of long sequences, noisy or HiFi.☆55Updated 5 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Yet Another Chimeric Read Detector☆81Updated last year
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆66Updated 5 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Updated 10 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Substring index for paths in a graph☆60Updated last week
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Alignment-based Scrubbing pipeline☆21Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Updated last month
- ☆16Updated 7 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- ☆46Updated 5 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆74Updated 3 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 9 months ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆70Updated last year